Cluster: MGYG000001159_CGC2
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 9
- Substrate:
- Genome ID: MGYG000001159
- CGC Family ID: CGCFAM_10796
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000001159_12 | MGYG000001159_12_95 | 118799 | 120115 | - | GH29 |
| CAZyme | MGYG000001159_12 | MGYG000001159_12_96 | 120189 | 122216 | - | GH20 |
| TF | MGYG000001159_12 | MGYG000001159_12_97 | 122289 | 123416 | - | LacI |
| CAZyme | MGYG000001159_12 | MGYG000001159_12_98 | 123613 | 126591 | - | GH18 | GH18 |
| CAZyme | MGYG000001159_12 | MGYG000001159_12_99 | 126875 | 128161 | - | GH5_18 |
| TC | MGYG000001159_12 | MGYG000001159_12_100 | 128184 | 129023 | - | 3.A.1.1.20 |
| TC | MGYG000001159_12 | MGYG000001159_12_101 | 129023 | 129994 | - | 3.A.1.1.42 |
| TC | MGYG000001159_12 | MGYG000001159_12_102 | 129991 | 131283 | - | 3.A.1.1.34 |
| CAZyme | MGYG000001159_12 | MGYG000001159_12_103 | 131362 | 134475 | - | GH38 |
| CAZyme | MGYG000001159_12 | MGYG000001159_12_104 | 134526 | 137645 | - | GH38 |
| CAZyme | MGYG000001159_12 | MGYG000001159_12_105 | 138001 | 140286 | - | GH3 |
| CAZyme | MGYG000001159_12 | MGYG000001159_12_106 | 140471 | 141766 | + | GH125 |
| TC | MGYG000001159_12 | MGYG000001159_12_107 | 141902 | 143623 | - | 3.A.1.5.11 |
| TC | MGYG000001159_12 | MGYG000001159_12_108 | 143616 | 144743 | - | 3.A.1.5.35 |
| TC | MGYG000001159_12 | MGYG000001159_12_109 | 144745 | 145857 | - | 3.A.1.5.39 |
| TC | MGYG000001159_12 | MGYG000001159_12_110 | 146015 | 147676 | - | 3.A.1.5.18 |
| CAZyme | MGYG000001159_12 | MGYG000001159_12_111 | 147939 | 149195 | - | CE9 |
Gene ID: MGYG000001159_12_95
Type: CAZyme
Location: 118799 - 120115 (-)
Type: CAZyme
Location: 118799 - 120115 (-)
Gene ID: MGYG000001159_12_96
Type: CAZyme
Location: 120189 - 122216 (-)
Type: CAZyme
Location: 120189 - 122216 (-)
Gene ID: MGYG000001159_12_97
Type: TF
Location: 122289 - 123416 (-)
Type: TF
Location: 122289 - 123416 (-)
Gene ID: MGYG000001159_12_98
Type: CAZyme
Location: 123613 - 126591 (-)
Type: CAZyme
Location: 123613 - 126591 (-)
Gene ID: MGYG000001159_12_99
Type: CAZyme
Location: 126875 - 128161 (-)
Type: CAZyme
Location: 126875 - 128161 (-)
Gene ID: MGYG000001159_12_100
Type: TC
Location: 128184 - 129023 (-)
Type: TC
Location: 128184 - 129023 (-)
Gene ID: MGYG000001159_12_101
Type: TC
Location: 129023 - 129994 (-)
Type: TC
Location: 129023 - 129994 (-)
Gene ID: MGYG000001159_12_102
Type: TC
Location: 129991 - 131283 (-)
Type: TC
Location: 129991 - 131283 (-)
Gene ID: MGYG000001159_12_103
Type: CAZyme
Location: 131362 - 134475 (-)
Type: CAZyme
Location: 131362 - 134475 (-)
Gene ID: MGYG000001159_12_104
Type: CAZyme
Location: 134526 - 137645 (-)
Type: CAZyme
Location: 134526 - 137645 (-)
Gene ID: MGYG000001159_12_105
Type: CAZyme
Location: 138001 - 140286 (-)
Type: CAZyme
Location: 138001 - 140286 (-)
Gene ID: MGYG000001159_12_106
Type: CAZyme
Location: 140471 - 141766 (+)
Type: CAZyme
Location: 140471 - 141766 (+)
Gene ID: MGYG000001159_12_107
Type: TC
Location: 141902 - 143623 (-)
Type: TC
Location: 141902 - 143623 (-)
Gene ID: MGYG000001159_12_108
Type: TC
Location: 143616 - 144743 (-)
Type: TC
Location: 143616 - 144743 (-)
Gene ID: MGYG000001159_12_109
Type: TC
Location: 144745 - 145857 (-)
Type: TC
Location: 144745 - 145857 (-)
Gene ID: MGYG000001159_12_110
Type: TC
Location: 146015 - 147676 (-)
Type: TC
Location: 146015 - 147676 (-)
Gene ID: MGYG000001159_12_111
Type: CAZyme
Location: 147939 - 149195 (-)
Type: CAZyme
Location: 147939 - 149195 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium pullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000001159_12_100 | vegan > omnivore | 1.63248 | 0.01252 |
| MGYG000001159_12_100 | vegetarian > omnivore | 2.00978 | 0.01057 |
| MGYG000001159_12_101 | vegan > omnivore | 1.00025 | 0.01252 |
| MGYG000001159_12_101 | vegetarian > omnivore | 1.75590 | 0.01057 |
| MGYG000001159_12_102 | vegetarian > omnivore | 1.03657 | 0.01057 |
| MGYG000001159_12_102 | vegetarian > vegan | 1.50467 | 0.01727 |