Cluster: MGYG000001159_CGC19
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 5
- Substrate:
- Genome ID: MGYG000001159
- CGC Family ID: CGCFAM_09487
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000001159_39 | MGYG000001159_39_38 | 50859 | 53396 | - | GH31_15 |
| TC | MGYG000001159_39 | MGYG000001159_39_39 | 53551 | 54378 | - | 3.A.1.1.36 |
| TC | MGYG000001159_39 | MGYG000001159_39_40 | 54380 | 55312 | - | 3.A.1.1.20 |
| STP | MGYG000001159_39 | MGYG000001159_39_41 | 55328 | 56716 | - | SBP_bac_1 |
| TF | MGYG000001159_39 | MGYG000001159_39_42 | 57218 | 58222 | + | LacI |
| CAZyme | MGYG000001159_39 | MGYG000001159_39_43 | 58420 | 60192 | - | GH13_30 |
| pfam | MGYG000001159_39 | MGYG000001159_39_44 | 60516 | 61853 | + | AAA_14 | DUF4143 |
| TC | MGYG000001159_39 | MGYG000001159_39_45 | 61950 | 62618 | - | 3.A.1.121.5 |
| pfam | MGYG000001159_39 | MGYG000001159_39_46 | 62783 | 63697 | - | RrnaAD |
| STP | MGYG000001159_39 | MGYG000001159_39_47 | 63907 | 64617 | - | AAA |
| CAZyme | MGYG000001159_39 | MGYG000001159_39_48 | 64629 | 66878 | - | GH77 |
| pfam | MGYG000001159_39 | MGYG000001159_39_49 | 67146 | 67907 | - | TraX |
| CAZyme | MGYG000001159_39 | MGYG000001159_39_50 | 67970 | 70060 | - | GH13_14 |
| TC | MGYG000001159_39 | MGYG000001159_39_51 | 70192 | 71097 | - | 3.A.1.1.27 |
| TC | MGYG000001159_39 | MGYG000001159_39_52 | 71094 | 72494 | - | 3.A.1.1.27 |
| pfam | MGYG000001159_39 | MGYG000001159_39_53 | 72514 | 73761 | - | SBP_bac_8 |
| CAZyme | MGYG000001159_39 | MGYG000001159_39_54 | 74130 | 75737 | + | GH13_44 |
Gene ID: MGYG000001159_39_38
Type: CAZyme
Location: 50859 - 53396 (-)
Type: CAZyme
Location: 50859 - 53396 (-)
Gene ID: MGYG000001159_39_39
Type: TC
Location: 53551 - 54378 (-)
Type: TC
Location: 53551 - 54378 (-)
Gene ID: MGYG000001159_39_40
Type: TC
Location: 54380 - 55312 (-)
Type: TC
Location: 54380 - 55312 (-)
Gene ID: MGYG000001159_39_41
Type: STP
Location: 55328 - 56716 (-)
Type: STP
Location: 55328 - 56716 (-)
Gene ID: MGYG000001159_39_42
Type: TF
Location: 57218 - 58222 (+)
Type: TF
Location: 57218 - 58222 (+)
Gene ID: MGYG000001159_39_43
Type: CAZyme
Location: 58420 - 60192 (-)
Type: CAZyme
Location: 58420 - 60192 (-)
Gene ID: MGYG000001159_39_44
Type: pfam
Location: 60516 - 61853 (+)
Type: pfam
Location: 60516 - 61853 (+)
Gene ID: MGYG000001159_39_45
Type: TC
Location: 61950 - 62618 (-)
Type: TC
Location: 61950 - 62618 (-)
Gene ID: MGYG000001159_39_46
Type: pfam
Location: 62783 - 63697 (-)
Type: pfam
Location: 62783 - 63697 (-)
Gene ID: MGYG000001159_39_47
Type: STP
Location: 63907 - 64617 (-)
Type: STP
Location: 63907 - 64617 (-)
Gene ID: MGYG000001159_39_48
Type: CAZyme
Location: 64629 - 66878 (-)
Type: CAZyme
Location: 64629 - 66878 (-)
Gene ID: MGYG000001159_39_49
Type: pfam
Location: 67146 - 67907 (-)
Type: pfam
Location: 67146 - 67907 (-)
Gene ID: MGYG000001159_39_50
Type: CAZyme
Location: 67970 - 70060 (-)
Type: CAZyme
Location: 67970 - 70060 (-)
Gene ID: MGYG000001159_39_51
Type: TC
Location: 70192 - 71097 (-)
Type: TC
Location: 70192 - 71097 (-)
Gene ID: MGYG000001159_39_52
Type: TC
Location: 71094 - 72494 (-)
Type: TC
Location: 71094 - 72494 (-)
Gene ID: MGYG000001159_39_53
Type: pfam
Location: 72514 - 73761 (-)
Type: pfam
Location: 72514 - 73761 (-)
Gene ID: MGYG000001159_39_54
Type: CAZyme
Location: 74130 - 75737 (+)
Type: CAZyme
Location: 74130 - 75737 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium pullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.