Cluster: MGYG000001158_CGC1
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000001158
- CGC Family ID: CGCFAM_00182
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000001158_1 | MGYG000001158_1_12 | 10330 | 11772 | + | 3.A.1.8.1 |
| TC | MGYG000001158_1 | MGYG000001158_1_13 | 11776 | 12846 | + | 3.A.1.1.3 |
| TC | MGYG000001158_1 | MGYG000001158_1_14 | 13480 | 15090 | + | 3.A.1.5.11 |
| TC | MGYG000001158_1 | MGYG000001158_1_15 | 15179 | 16132 | + | 3.A.1.5.39 |
| TC | MGYG000001158_1 | MGYG000001158_1_16 | 16129 | 16959 | + | 3.A.1.5.39 |
| TC | MGYG000001158_1 | MGYG000001158_1_17 | 16963 | 17958 | + | 3.A.1.5.37 |
| TC | MGYG000001158_1 | MGYG000001158_1_18 | 17948 | 18733 | + | 3.A.1.5.36 |
| pfam | MGYG000001158_1 | MGYG000001158_1_19 | 18810 | 19973 | + | HGD-D |
| pfam | MGYG000001158_1 | MGYG000001158_1_20 | 20024 | 20788 | + | BcrAD_BadFG |
| CAZyme | MGYG000001158_1 | MGYG000001158_1_21 | 20801 | 22018 | + | GT4 |
Gene ID: MGYG000001158_1_12
Type: TC
Location: 10330 - 11772 (+)
Type: TC
Location: 10330 - 11772 (+)
Gene ID: MGYG000001158_1_13
Type: TC
Location: 11776 - 12846 (+)
Type: TC
Location: 11776 - 12846 (+)
Gene ID: MGYG000001158_1_14
Type: TC
Location: 13480 - 15090 (+)
Type: TC
Location: 13480 - 15090 (+)
Gene ID: MGYG000001158_1_15
Type: TC
Location: 15179 - 16132 (+)
Type: TC
Location: 15179 - 16132 (+)
Gene ID: MGYG000001158_1_16
Type: TC
Location: 16129 - 16959 (+)
Type: TC
Location: 16129 - 16959 (+)
Gene ID: MGYG000001158_1_17
Type: TC
Location: 16963 - 17958 (+)
Type: TC
Location: 16963 - 17958 (+)
Gene ID: MGYG000001158_1_18
Type: TC
Location: 17948 - 18733 (+)
Type: TC
Location: 17948 - 18733 (+)
Gene ID: MGYG000001158_1_19
Type: pfam
Location: 18810 - 19973 (+)
Type: pfam
Location: 18810 - 19973 (+)
Gene ID: MGYG000001158_1_20
Type: pfam
Location: 20024 - 20788 (+)
Type: pfam
Location: 20024 - 20788 (+)
Gene ID: MGYG000001158_1_21
Type: CAZyme
Location: 20801 - 22018 (+)
Type: CAZyme
Location: 20801 - 22018 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902469665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000001158_1_14 | vegan > omnivore | 3.38268 | 0.00863 |
| MGYG000001158_1_14 | vegetarian > omnivore | 1.16495 | 0.04845 |
| MGYG000001158_1_15 | vegan > omnivore | 2.81910 | 0.00863 |
| MGYG000001158_1_15 | vegetarian > omnivore | 1.21213 | 0.04845 |
| MGYG000001158_1_16 | vegan > omnivore | 2.99958 | 0.00863 |
| MGYG000001158_1_16 | vegetarian > omnivore | 1.21238 | 0.04845 |
| MGYG000001158_1_17 | vegan > omnivore | 1.35974 | 0.00863 |
| MGYG000001158_1_18 | vegan > omnivore | 2.86335 | 0.00863 |
| MGYG000001158_1_21 | vegan > omnivore | 1.62679 | 0.00863 |