Cluster: MGYG000001157_CGC29
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000001157
- CGC Family ID: CGCFAM_00041
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000001157_96 | MGYG000001157_96_6 | 5914 | 6573 | + | 3.A.1.3.10 |
| TC | MGYG000001157_96 | MGYG000001157_96_7 | 6554 | 7252 | + | 3.A.1.3.16 |
| TC | MGYG000001157_96 | MGYG000001157_96_8 | 7234 | 7983 | + | 3.A.1.3.15 |
| STP | MGYG000001157_96 | MGYG000001157_96_9 | 8062 | 8937 | + | SBP_bac_3 |
| CAZyme | MGYG000001157_96 | MGYG000001157_96_10 | 9130 | 10104 | - | CE8 |
| pfam | MGYG000001157_96 | MGYG000001157_96_11 | 10104 | 10931 | - | AP_endonuc_2 |
| CAZyme | MGYG000001157_96 | MGYG000001157_96_12 | 10944 | 12095 | - | GH105 |
| CAZyme | MGYG000001157_96 | MGYG000001157_96_13 | 12099 | 13652 | - | GH28 |
| TF | MGYG000001157_96 | MGYG000001157_96_14 | 13784 | 14647 | + | HTH_AraC | HTH_AraC |
| TC | MGYG000001157_96 | MGYG000001157_96_15 | 14890 | 15750 | - | 3.A.1.1.11 |
| TC | MGYG000001157_96 | MGYG000001157_96_16 | 15764 | 16672 | - | 3.A.1.1.11 |
| TC | MGYG000001157_96 | MGYG000001157_96_17 | 16794 | 18182 | - | 3.A.1.1.11 |
Gene ID: MGYG000001157_96_6
Type: TC
Location: 5914 - 6573 (+)
Type: TC
Location: 5914 - 6573 (+)
Gene ID: MGYG000001157_96_7
Type: TC
Location: 6554 - 7252 (+)
Type: TC
Location: 6554 - 7252 (+)
Gene ID: MGYG000001157_96_8
Type: TC
Location: 7234 - 7983 (+)
Type: TC
Location: 7234 - 7983 (+)
Gene ID: MGYG000001157_96_9
Type: STP
Location: 8062 - 8937 (+)
Type: STP
Location: 8062 - 8937 (+)
Gene ID: MGYG000001157_96_10
Type: CAZyme
Location: 9130 - 10104 (-)
Type: CAZyme
Location: 9130 - 10104 (-)
Gene ID: MGYG000001157_96_11
Type: pfam
Location: 10104 - 10931 (-)
Type: pfam
Location: 10104 - 10931 (-)
Gene ID: MGYG000001157_96_12
Type: CAZyme
Location: 10944 - 12095 (-)
Type: CAZyme
Location: 10944 - 12095 (-)
Gene ID: MGYG000001157_96_13
Type: CAZyme
Location: 12099 - 13652 (-)
Type: CAZyme
Location: 12099 - 13652 (-)
Gene ID: MGYG000001157_96_14
Type: TF
Location: 13784 - 14647 (+)
Type: TF
Location: 13784 - 14647 (+)
Gene ID: MGYG000001157_96_15
Type: TC
Location: 14890 - 15750 (-)
Type: TC
Location: 14890 - 15750 (-)
Gene ID: MGYG000001157_96_16
Type: TC
Location: 15764 - 16672 (-)
Type: TC
Location: 15764 - 16672 (-)
Gene ID: MGYG000001157_96_17
Type: TC
Location: 16794 - 18182 (-)
Type: TC
Location: 16794 - 18182 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900540775
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.