Cluster: MGYG000001112_CGC7
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: MGYG000001112
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000001112_12 | MGYG000001112_12_251 | 281413 | 282525 | + | 3.A.1.132.3 |
| pfam | MGYG000001112_12 | MGYG000001112_12_252 | 282599 | 283228 | - | His_Phos_1 |
| TC | MGYG000001112_12 | MGYG000001112_12_253 | 283282 | 284649 | - | 1.B.17.3.7 |
| TC | MGYG000001112_12 | MGYG000001112_12_254 | 284726 | 286657 | - | 3.A.1.122.12 |
| TC | MGYG000001112_12 | MGYG000001112_12_255 | 286676 | 287899 | - | 3.A.1.122.12 |
| pfam | MGYG000001112_12 | MGYG000001112_12_256 | 288080 | 289750 | + | tRNA-synt_1c | tRNA-synt_1c_C | tRNA-synt_1c_C2 |
| pfam | MGYG000001112_12 | MGYG000001112_12_257 | 289817 | 290257 | + | CxxCxxCC |
| CAZyme | MGYG000001112_12 | MGYG000001112_12_258 | 290402 | 292492 | + | GH77 |
| CAZyme | MGYG000001112_12 | MGYG000001112_12_259 | 292504 | 294693 | + | CBM48 | GH13_9 |
| CAZyme | MGYG000001112_12 | MGYG000001112_12_260 | 294711 | 296702 | + | GH13_11 |
| pfam | MGYG000001112_12 | MGYG000001112_12_261 | 296707 | 298017 | + | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | MGYG000001112_12 | MGYG000001112_12_262 | 298108 | 299547 | + | GT5 |
| CAZyme | MGYG000001112_12 | MGYG000001112_12_263 | 299663 | 302128 | + | GT35 |
Gene ID: MGYG000001112_12_251
Type: TC
Location: 281413 - 282525 (+)
Type: TC
Location: 281413 - 282525 (+)
Gene ID: MGYG000001112_12_252
Type: pfam
Location: 282599 - 283228 (-)
Type: pfam
Location: 282599 - 283228 (-)
Gene ID: MGYG000001112_12_253
Type: TC
Location: 283282 - 284649 (-)
Type: TC
Location: 283282 - 284649 (-)
Gene ID: MGYG000001112_12_254
Type: TC
Location: 284726 - 286657 (-)
Type: TC
Location: 284726 - 286657 (-)
Gene ID: MGYG000001112_12_255
Type: TC
Location: 286676 - 287899 (-)
Type: TC
Location: 286676 - 287899 (-)
Gene ID: MGYG000001112_12_256
Type: pfam
Location: 288080 - 289750 (+)
Type: pfam
Location: 288080 - 289750 (+)
Gene ID: MGYG000001112_12_257
Type: pfam
Location: 289817 - 290257 (+)
Type: pfam
Location: 289817 - 290257 (+)
Gene ID: MGYG000001112_12_258
Type: CAZyme
Location: 290402 - 292492 (+)
Type: CAZyme
Location: 290402 - 292492 (+)
Gene ID: MGYG000001112_12_259
Type: CAZyme
Location: 292504 - 294693 (+)
Type: CAZyme
Location: 292504 - 294693 (+)
Gene ID: MGYG000001112_12_260
Type: CAZyme
Location: 294711 - 296702 (+)
Type: CAZyme
Location: 294711 - 296702 (+)
Gene ID: MGYG000001112_12_261
Type: pfam
Location: 296707 - 298017 (+)
Type: pfam
Location: 296707 - 298017 (+)
Gene ID: MGYG000001112_12_262
Type: CAZyme
Location: 298108 - 299547 (+)
Type: CAZyme
Location: 298108 - 299547 (+)
Gene ID: MGYG000001112_12_263
Type: CAZyme
Location: 299663 - 302128 (+)
Type: CAZyme
Location: 299663 - 302128 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp905205995
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000001112_12_251 | vegan > omnivore | 1.61713 | 0.00918 |
| MGYG000001112_12_251 | vegetarian > omnivore | 1.06018 | 0.00573 |
| MGYG000001112_12_257 | vegetarian > omnivore | 1.23599 | 0.00573 |
| MGYG000001112_12_257 | vegetarian > vegan | 1.51646 | 0.02538 |