Cluster: MGYG000001112_CGC10
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000001112
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000001112_15 | MGYG000001112_15_160 | 171734 | 172789 | + | GT9 |
| pfam | MGYG000001112_15 | MGYG000001112_15_161 | 172861 | 173205 | - | CMD |
| TF | MGYG000001112_15 | MGYG000001112_15_162 | 173309 | 174199 | + | HTH_AraC | HTH_AraC |
| TC | MGYG000001112_15 | MGYG000001112_15_163 | 174276 | 176120 | + | 3.A.1.106.2 |
Gene ID: MGYG000001112_15_160
Type: CAZyme
Location: 171734 - 172789 (+)
Type: CAZyme
Location: 171734 - 172789 (+)
Gene ID: MGYG000001112_15_161
Type: pfam
Location: 172861 - 173205 (-)
Type: pfam
Location: 172861 - 173205 (-)
Gene ID: MGYG000001112_15_162
Type: TF
Location: 173309 - 174199 (+)
Type: TF
Location: 173309 - 174199 (+)
Gene ID: MGYG000001112_15_163
Type: TC
Location: 174276 - 176120 (+)
Type: TC
Location: 174276 - 176120 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp905205995
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000001112_15_160 | vegetarian > omnivore | 1.61393 | 0.00573 |
| MGYG000001112_15_160 | vegetarian > vegan | 1.40373 | 0.02538 |
| MGYG000001112_15_161 | vegan > omnivore | 1.22926 | 0.00918 |
| MGYG000001112_15_161 | vegetarian > omnivore | 1.53471 | 0.00573 |
| MGYG000001112_15_162 | vegetarian > vegan | 1.26804 | 0.02538 |
| MGYG000001112_15_163 | vegetarian > vegan | 1.02625 | 0.02538 |