Cluster: MGYG000001105_CGC11
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000001105
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000001105_14 | MGYG000001105_14_155 | 177077 | 178540 | + | 2.A.3.2.3 |
| NULL(UNKNOWN) | MGYG000001105_14 | MGYG000001105_14_156 | 179004 | 179324 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000001105_14 | MGYG000001105_14_157 | 179446 | 181806 | + | 9.A.8.1.6 |
| TC | MGYG000001105_14 | MGYG000001105_14_158 | 182120 | 183784 | + | 4.A.1.1.3 |
| TF | MGYG000001105_14 | MGYG000001105_14_159 | 183847 | 184599 | - | HTH_6 |
| CAZyme | MGYG000001105_14 | MGYG000001105_14_160 | 184775 | 186148 | + | GH4 |
| NULL(UNKNOWN) | MGYG000001105_14 | MGYG000001105_14_161 | 186315 | 187067 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000001105_14 | MGYG000001105_14_162 | 187241 | 188437 | + | 2.A.1.2.18 |
| CAZyme | MGYG000001105_14 | MGYG000001105_14_163 | 188670 | 190046 | + | GH13_20 |
Gene ID: MGYG000001105_14_155
Type: TC
Location: 177077 - 178540 (+)
Type: TC
Location: 177077 - 178540 (+)
Gene ID: MGYG000001105_14_156
Type:
Location: 179004 - 179324 (+)
Type:
Location: 179004 - 179324 (+)
Gene ID: MGYG000001105_14_157
Type: TC
Location: 179446 - 181806 (+)
Type: TC
Location: 179446 - 181806 (+)
Gene ID: MGYG000001105_14_158
Type: TC
Location: 182120 - 183784 (+)
Type: TC
Location: 182120 - 183784 (+)
Gene ID: MGYG000001105_14_159
Type: TF
Location: 183847 - 184599 (-)
Type: TF
Location: 183847 - 184599 (-)
Gene ID: MGYG000001105_14_160
Type: CAZyme
Location: 184775 - 186148 (+)
Type: CAZyme
Location: 184775 - 186148 (+)
Gene ID: MGYG000001105_14_161
Type:
Location: 186315 - 187067 (+)
Type:
Location: 186315 - 187067 (+)
Gene ID: MGYG000001105_14_162
Type: TC
Location: 187241 - 188437 (+)
Type: TC
Location: 187241 - 188437 (+)
Gene ID: MGYG000001105_14_163
Type: CAZyme
Location: 188670 - 190046 (+)
Type: CAZyme
Location: 188670 - 190046 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902469185
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000001105_14_155 | vegan > omnivore | 1.45232 | 0.01287 |
| MGYG000001105_14_160 | vegan > omnivore | 1.29708 | 0.01287 |
| MGYG000001105_14_161 | vegan > omnivore | 1.63560 | 0.01287 |