Cluster: MGYG000001003_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000001003
- CGC Family ID: CGCFAM_00049
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000001003_15 | MGYG000001003_15_16 | 21772 | 23652 | + | 9.B.18.2.1 |
| STP | MGYG000001003_15 | MGYG000001003_15_17 | 23668 | 24921 | + | Aminotran_1_2 |
| TC | MGYG000001003_15 | MGYG000001003_15_18 | 24921 | 25577 | + | 9.B.18.1.2 |
| CAZyme | MGYG000001003_15 | MGYG000001003_15_19 | 25574 | 26689 | + | GT4 |
| NULL(UNKNOWN) | MGYG000001003_15 | MGYG000001003_15_20 | 26800 | 27018 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000001003_15 | MGYG000001003_15_21 | 27236 | 28213 | + | GT2 |
| CAZyme | MGYG000001003_15 | MGYG000001003_15_22 | 28213 | 29037 | + | GT2 |
Gene ID: MGYG000001003_15_16
Type: TC
Location: 21772 - 23652 (+)
Type: TC
Location: 21772 - 23652 (+)
Gene ID: MGYG000001003_15_17
Type: STP
Location: 23668 - 24921 (+)
Type: STP
Location: 23668 - 24921 (+)
Gene ID: MGYG000001003_15_18
Type: TC
Location: 24921 - 25577 (+)
Type: TC
Location: 24921 - 25577 (+)
Gene ID: MGYG000001003_15_19
Type: CAZyme
Location: 25574 - 26689 (+)
Type: CAZyme
Location: 25574 - 26689 (+)
Gene ID: MGYG000001003_15_20
Type:
Location: 26800 - 27018 (-)
Type:
Location: 26800 - 27018 (-)
Gene ID: MGYG000001003_15_21
Type: CAZyme
Location: 27236 - 28213 (+)
Type: CAZyme
Location: 27236 - 28213 (+)
Gene ID: MGYG000001003_15_22
Type: CAZyme
Location: 28213 - 29037 (+)
Type: CAZyme
Location: 28213 - 29037 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900543845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.