Cluster: MGYG000000996_CGC1
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000000996
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000000996_1 | MGYG000000996_1_29 | 32282 | 33724 | + | 3.A.1.8.1 |
| TC | MGYG000000996_1 | MGYG000000996_1_30 | 33728 | 34798 | + | 3.A.1.1.3 |
| pfam | MGYG000000996_1 | MGYG000000996_1_31 | 35228 | 36511 | + | HGD-D |
| TC | MGYG000000996_1 | MGYG000000996_1_32 | 36696 | 38306 | + | 3.A.1.5.11 |
| TC | MGYG000000996_1 | MGYG000000996_1_33 | 38395 | 39348 | + | 3.A.1.5.39 |
| TC | MGYG000000996_1 | MGYG000000996_1_34 | 39345 | 40175 | + | 3.A.1.5.39 |
| TC | MGYG000000996_1 | MGYG000000996_1_35 | 40179 | 41174 | + | 3.A.1.5.37 |
| TC | MGYG000000996_1 | MGYG000000996_1_36 | 41164 | 41949 | + | 3.A.1.5.36 |
| pfam | MGYG000000996_1 | MGYG000000996_1_37 | 42026 | 43189 | + | HGD-D |
| pfam | MGYG000000996_1 | MGYG000000996_1_38 | 43345 | 44109 | + | BcrAD_BadFG |
| CAZyme | MGYG000000996_1 | MGYG000000996_1_39 | 44124 | 45341 | + | GT4 |
Gene ID: MGYG000000996_1_29
Type: TC
Location: 32282 - 33724 (+)
Type: TC
Location: 32282 - 33724 (+)
Gene ID: MGYG000000996_1_30
Type: TC
Location: 33728 - 34798 (+)
Type: TC
Location: 33728 - 34798 (+)
Gene ID: MGYG000000996_1_31
Type: pfam
Location: 35228 - 36511 (+)
Type: pfam
Location: 35228 - 36511 (+)
Gene ID: MGYG000000996_1_32
Type: TC
Location: 36696 - 38306 (+)
Type: TC
Location: 36696 - 38306 (+)
Gene ID: MGYG000000996_1_33
Type: TC
Location: 38395 - 39348 (+)
Type: TC
Location: 38395 - 39348 (+)
Gene ID: MGYG000000996_1_34
Type: TC
Location: 39345 - 40175 (+)
Type: TC
Location: 39345 - 40175 (+)
Gene ID: MGYG000000996_1_35
Type: TC
Location: 40179 - 41174 (+)
Type: TC
Location: 40179 - 41174 (+)
Gene ID: MGYG000000996_1_36
Type: TC
Location: 41164 - 41949 (+)
Type: TC
Location: 41164 - 41949 (+)
Gene ID: MGYG000000996_1_37
Type: pfam
Location: 42026 - 43189 (+)
Type: pfam
Location: 42026 - 43189 (+)
Gene ID: MGYG000000996_1_38
Type: pfam
Location: 43345 - 44109 (+)
Type: pfam
Location: 43345 - 44109 (+)
Gene ID: MGYG000000996_1_39
Type: CAZyme
Location: 44124 - 45341 (+)
Type: CAZyme
Location: 44124 - 45341 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900547345
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000000996_1_32 | vegan > omnivore | 3.26379 | 0.01057 |
| MGYG000000996_1_32 | vegetarian > omnivore | 1.00718 | 0.02677 |
| MGYG000000996_1_33 | vegan > omnivore | 2.73013 | 0.01057 |
| MGYG000000996_1_33 | vegetarian > omnivore | 1.13203 | 0.02677 |
| MGYG000000996_1_34 | vegan > omnivore | 2.88493 | 0.01057 |
| MGYG000000996_1_34 | vegetarian > omnivore | 1.14539 | 0.02677 |
| MGYG000000996_1_36 | vegan > omnivore | 2.81902 | 0.01057 |
| MGYG000000996_1_39 | vegan > omnivore | 1.67556 | 0.01057 |