Cluster: MGYG000000995_CGC3
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000000995
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000000995_2 | MGYG000000995_2_57 | 60685 | 62127 | + | 3.A.1.8.1 |
| TC | MGYG000000995_2 | MGYG000000995_2_58 | 62131 | 63201 | + | 3.A.1.1.3 |
| pfam | MGYG000000995_2 | MGYG000000995_2_59 | 63631 | 64914 | + | HGD-D |
| TC | MGYG000000995_2 | MGYG000000995_2_60 | 65099 | 66709 | + | 3.A.1.5.11 |
| TC | MGYG000000995_2 | MGYG000000995_2_61 | 66798 | 67751 | + | 3.A.1.5.39 |
| TC | MGYG000000995_2 | MGYG000000995_2_62 | 67748 | 68578 | + | 3.A.1.5.39 |
| TC | MGYG000000995_2 | MGYG000000995_2_63 | 68582 | 69577 | + | 3.A.1.5.37 |
| TC | MGYG000000995_2 | MGYG000000995_2_64 | 69567 | 70352 | + | 3.A.1.5.36 |
| pfam | MGYG000000995_2 | MGYG000000995_2_65 | 70429 | 71592 | + | HGD-D |
| pfam | MGYG000000995_2 | MGYG000000995_2_66 | 71748 | 72512 | + | BcrAD_BadFG |
| CAZyme | MGYG000000995_2 | MGYG000000995_2_67 | 72527 | 73744 | + | GT4 |
Gene ID: MGYG000000995_2_57
Type: TC
Location: 60685 - 62127 (+)
Type: TC
Location: 60685 - 62127 (+)
Gene ID: MGYG000000995_2_58
Type: TC
Location: 62131 - 63201 (+)
Type: TC
Location: 62131 - 63201 (+)
Gene ID: MGYG000000995_2_59
Type: pfam
Location: 63631 - 64914 (+)
Type: pfam
Location: 63631 - 64914 (+)
Gene ID: MGYG000000995_2_60
Type: TC
Location: 65099 - 66709 (+)
Type: TC
Location: 65099 - 66709 (+)
Gene ID: MGYG000000995_2_61
Type: TC
Location: 66798 - 67751 (+)
Type: TC
Location: 66798 - 67751 (+)
Gene ID: MGYG000000995_2_62
Type: TC
Location: 67748 - 68578 (+)
Type: TC
Location: 67748 - 68578 (+)
Gene ID: MGYG000000995_2_63
Type: TC
Location: 68582 - 69577 (+)
Type: TC
Location: 68582 - 69577 (+)
Gene ID: MGYG000000995_2_64
Type: TC
Location: 69567 - 70352 (+)
Type: TC
Location: 69567 - 70352 (+)
Gene ID: MGYG000000995_2_65
Type: pfam
Location: 70429 - 71592 (+)
Type: pfam
Location: 70429 - 71592 (+)
Gene ID: MGYG000000995_2_66
Type: pfam
Location: 71748 - 72512 (+)
Type: pfam
Location: 71748 - 72512 (+)
Gene ID: MGYG000000995_2_67
Type: CAZyme
Location: 72527 - 73744 (+)
Type: CAZyme
Location: 72527 - 73744 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900540985
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000000995_2_60 | vegan > omnivore | 3.33670 | 0.01057 |
| MGYG000000995_2_60 | vegetarian > omnivore | 1.06447 | 0.03262 |
| MGYG000000995_2_61 | vegan > omnivore | 2.78545 | 0.01057 |
| MGYG000000995_2_61 | vegetarian > omnivore | 1.18594 | 0.03262 |
| MGYG000000995_2_62 | vegan > omnivore | 2.96597 | 0.01057 |
| MGYG000000995_2_62 | vegetarian > omnivore | 1.19327 | 0.03262 |
| MGYG000000995_2_64 | vegan > omnivore | 2.84999 | 0.01057 |
| MGYG000000995_2_67 | vegan > omnivore | 1.68802 | 0.01057 |