Cluster: MGYG000000993_CGC7
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000000993
- CGC Family ID: CGCFAM_00908
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000000993_3 | MGYG000000993_3_41 | 40460 | 41341 | + | 3.A.1.15.4 |
| TC | MGYG000000993_3 | MGYG000000993_3_42 | 41341 | 42237 | + | 3.A.1.15.4 |
| TC | MGYG000000993_3 | MGYG000000993_3_43 | 42241 | 43092 | + | 3.A.1.15.4 |
| TC | MGYG000000993_3 | MGYG000000993_3_44 | 43085 | 43918 | + | 3.A.1.15.4 |
| NULL(UNKNOWN) | MGYG000000993_3 | MGYG000000993_3_45 | 44133 | 44564 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | MGYG000000993_3 | MGYG000000993_3_46 | 44590 | 45762 | - | MTS | tRNA_U5-meth_tr | Methyltransf_31 |
| CAZyme | MGYG000000993_3 | MGYG000000993_3_47 | 45759 | 46802 | - | GH3 |
Gene ID: MGYG000000993_3_41
Type: TC
Location: 40460 - 41341 (+)
Type: TC
Location: 40460 - 41341 (+)
Gene ID: MGYG000000993_3_42
Type: TC
Location: 41341 - 42237 (+)
Type: TC
Location: 41341 - 42237 (+)
Gene ID: MGYG000000993_3_43
Type: TC
Location: 42241 - 43092 (+)
Type: TC
Location: 42241 - 43092 (+)
Gene ID: MGYG000000993_3_44
Type: TC
Location: 43085 - 43918 (+)
Type: TC
Location: 43085 - 43918 (+)
Gene ID: MGYG000000993_3_45
Type:
Location: 44133 - 44564 (-)
Type:
Location: 44133 - 44564 (-)
Gene ID: MGYG000000993_3_46
Type: pfam
Location: 44590 - 45762 (-)
Type: pfam
Location: 44590 - 45762 (-)
Gene ID: MGYG000000993_3_47
Type: CAZyme
Location: 45759 - 46802 (-)
Type: CAZyme
Location: 45759 - 46802 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp900756155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000000993_3_43 | vegan > omnivore | 2.24507 | 0.00918 |
| MGYG000000993_3_43 | vegetarian > omnivore | 1.26800 | 0.00711 |
| MGYG000000993_3_44 | vegan > omnivore | 2.52476 | 0.00918 |
| MGYG000000993_3_44 | vegetarian > omnivore | 1.71491 | 0.00711 |
| MGYG000000993_3_45 | vegetarian > vegan | 1.21578 | 0.04731 |
| MGYG000000993_3_45 | vegetarian > omnivore | 2.68697 | 0.00711 |
| MGYG000000993_3_45 | vegan > omnivore | 1.47118 | 0.00918 |
| MGYG000000993_3_46 | vegetarian > omnivore | 1.07436 | 0.00711 |
| MGYG000000993_3_46 | vegan > omnivore | 1.08375 | 0.00918 |