Cluster: MGYG000000940_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000000940
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000000940_9 | MGYG000000940_9_7 | 8919 | 10478 | + | 2.A.2.5.1 |
| CAZyme | MGYG000000940_9 | MGYG000000940_9_8 | 10594 | 12189 | + | GH28 |
| peptidase | MGYG000000940_9 | MGYG000000940_9_9 | 12294 | 13103 | + | S09.UPW |
| CAZyme | MGYG000000940_9 | MGYG000000940_9_10 | 13100 | 15265 | + | CE19 | CE8 |
| pfam | MGYG000000940_9 | MGYG000000940_9_11 | 15335 | 16003 | + | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | MGYG000000940_9 | MGYG000000940_9_12 | 16111 | 17349 | + | GH105 |
Gene ID: MGYG000000940_9_7
Type: TC
Location: 8919 - 10478 (+)
Type: TC
Location: 8919 - 10478 (+)
Gene ID: MGYG000000940_9_8
Type: CAZyme
Location: 10594 - 12189 (+)
Type: CAZyme
Location: 10594 - 12189 (+)
Gene ID: MGYG000000940_9_9
Type: peptidase
Location: 12294 - 13103 (+)
Type: peptidase
Location: 12294 - 13103 (+)
Gene ID: MGYG000000940_9_10
Type: CAZyme
Location: 13100 - 15265 (+)
Type: CAZyme
Location: 13100 - 15265 (+)
Gene ID: MGYG000000940_9_11
Type: pfam
Location: 15335 - 16003 (+)
Type: pfam
Location: 15335 - 16003 (+)
Gene ID: MGYG000000940_9_12
Type: CAZyme
Location: 16111 - 17349 (+)
Type: CAZyme
Location: 16111 - 17349 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900548935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000000940_9_12 | vegan > omnivore | 1.08684 | 0.02934 |