Cluster: MGYG000000940_CGC2
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000000940
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000000940_4 | MGYG000000940_4_5 | 3852 | 4985 | - | CE9 |
| STP | MGYG000000940_4 | MGYG000000940_4_6 | 5101 | 6267 | - | SIS | SIS |
| TF | MGYG000000940_4 | MGYG000000940_4_7 | 6379 | 7113 | - | GntR |
| TC | MGYG000000940_4 | MGYG000000940_4_8 | 7201 | 7629 | - | 4.A.6.1.8 |
| NULL(UNKNOWN) | MGYG000000940_4 | MGYG000000940_4_9 | 7711 | 8334 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000000940_4 | MGYG000000940_4_10 | 8523 | 9362 | - | 4.A.6.1.18 |
| TC | MGYG000000940_4 | MGYG000000940_4_11 | 9352 | 10239 | - | 4.A.6.1.18 |
| TC | MGYG000000940_4 | MGYG000000940_4_12 | 10333 | 10797 | - | 4.A.6.1.18 |
| CAZyme | MGYG000000940_4 | MGYG000000940_4_13 | 10800 | 12596 | - | GH35 |
| pfam | MGYG000000940_4 | MGYG000000940_4_14 | 13081 | 13512 | - | DUF386 |
| CAZyme | MGYG000000940_4 | MGYG000000940_4_15 | 13587 | 14756 | - | CE9 |
| TF | MGYG000000940_4 | MGYG000000940_4_16 | 14900 | 15631 | - | GntR |
| TC | MGYG000000940_4 | MGYG000000940_4_17 | 15864 | 17351 | - | 4.A.1.1.7 |
Gene ID: MGYG000000940_4_5
Type: CAZyme
Location: 3852 - 4985 (-)
Type: CAZyme
Location: 3852 - 4985 (-)
Gene ID: MGYG000000940_4_6
Type: STP
Location: 5101 - 6267 (-)
Type: STP
Location: 5101 - 6267 (-)
Gene ID: MGYG000000940_4_7
Type: TF
Location: 6379 - 7113 (-)
Type: TF
Location: 6379 - 7113 (-)
Gene ID: MGYG000000940_4_8
Type: TC
Location: 7201 - 7629 (-)
Type: TC
Location: 7201 - 7629 (-)
Gene ID: MGYG000000940_4_9
Type:
Location: 7711 - 8334 (-)
Type:
Location: 7711 - 8334 (-)
Gene ID: MGYG000000940_4_10
Type: TC
Location: 8523 - 9362 (-)
Type: TC
Location: 8523 - 9362 (-)
Gene ID: MGYG000000940_4_11
Type: TC
Location: 9352 - 10239 (-)
Type: TC
Location: 9352 - 10239 (-)
Gene ID: MGYG000000940_4_12
Type: TC
Location: 10333 - 10797 (-)
Type: TC
Location: 10333 - 10797 (-)
Gene ID: MGYG000000940_4_13
Type: CAZyme
Location: 10800 - 12596 (-)
Type: CAZyme
Location: 10800 - 12596 (-)
Gene ID: MGYG000000940_4_14
Type: pfam
Location: 13081 - 13512 (-)
Type: pfam
Location: 13081 - 13512 (-)
Gene ID: MGYG000000940_4_15
Type: CAZyme
Location: 13587 - 14756 (-)
Type: CAZyme
Location: 13587 - 14756 (-)
Gene ID: MGYG000000940_4_16
Type: TF
Location: 14900 - 15631 (-)
Type: TF
Location: 14900 - 15631 (-)
Gene ID: MGYG000000940_4_17
Type: TC
Location: 15864 - 17351 (-)
Type: TC
Location: 15864 - 17351 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900548935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000000940_4_10 | vegetarian > vegan | 2.55987 | 0.01810 |
| MGYG000000940_4_12 | vegetarian > vegan | 3.41969 | 0.01810 |
| MGYG000000940_4_13 | vegetarian > vegan | 2.74444 | 0.01810 |
| MGYG000000940_4_15 | vegetarian > vegan | 1.47881 | 0.01810 |
| MGYG000000940_4_16 | vegetarian > vegan | 3.39830 | 0.01810 |