Cluster: MGYG000000896_CGC7
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000000896
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000000896_11 | MGYG000000896_11_65 | 65946 | 67367 | - | GH1 |
| TC | MGYG000000896_11 | MGYG000000896_11_66 | 67444 | 69222 | - | 4.A.3.1.1 |
| TF | MGYG000000896_11 | MGYG000000896_11_67 | 69497 | 70507 | + | LacI |
| TC | MGYG000000896_11 | MGYG000000896_11_68 | 70681 | 72441 | - | 4.A.3.1.1 |
| CAZyme | MGYG000000896_11 | MGYG000000896_11_69 | 72617 | 74059 | - | GH1 |
| TF | MGYG000000896_11 | MGYG000000896_11_70 | 74401 | 75438 | + | LacI |
| CAZyme | MGYG000000896_11 | MGYG000000896_11_71 | 75706 | 77145 | - | GH1 |
| TC | MGYG000000896_11 | MGYG000000896_11_72 | 77212 | 78987 | - | 4.A.3.1.1 |
| TF | MGYG000000896_11 | MGYG000000896_11_73 | 79344 | 80348 | + | LacI |
| TC | MGYG000000896_11 | MGYG000000896_11_74 | 80563 | 80901 | + | 4.A.3.1.2 |
Gene ID: MGYG000000896_11_65
Type: CAZyme
Location: 65946 - 67367 (-)
Type: CAZyme
Location: 65946 - 67367 (-)
Gene ID: MGYG000000896_11_66
Type: TC
Location: 67444 - 69222 (-)
Type: TC
Location: 67444 - 69222 (-)
Gene ID: MGYG000000896_11_67
Type: TF
Location: 69497 - 70507 (+)
Type: TF
Location: 69497 - 70507 (+)
Gene ID: MGYG000000896_11_68
Type: TC
Location: 70681 - 72441 (-)
Type: TC
Location: 70681 - 72441 (-)
Gene ID: MGYG000000896_11_69
Type: CAZyme
Location: 72617 - 74059 (-)
Type: CAZyme
Location: 72617 - 74059 (-)
Gene ID: MGYG000000896_11_70
Type: TF
Location: 74401 - 75438 (+)
Type: TF
Location: 74401 - 75438 (+)
Gene ID: MGYG000000896_11_71
Type: CAZyme
Location: 75706 - 77145 (-)
Type: CAZyme
Location: 75706 - 77145 (-)
Gene ID: MGYG000000896_11_72
Type: TC
Location: 77212 - 78987 (-)
Type: TC
Location: 77212 - 78987 (-)
Gene ID: MGYG000000896_11_73
Type: TF
Location: 79344 - 80348 (+)
Type: TF
Location: 79344 - 80348 (+)
Gene ID: MGYG000000896_11_74
Type: TC
Location: 80563 - 80901 (+)
Type: TC
Location: 80563 - 80901 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900540895
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.