Cluster: MGYG000000896_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000000896
- CGC Family ID: CGCFAM_00154
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000000896_19 | MGYG000000896_19_33 | 37970 | 40738 | - | 3.A.3.4.1 |
| STP | MGYG000000896_19 | MGYG000000896_19_34 | 41178 | 41861 | + | Pribosyltran |
| TF | MGYG000000896_19 | MGYG000000896_19_35 | 42293 | 43147 | - | HTH_6 |
| CAZyme | MGYG000000896_19 | MGYG000000896_19_36 | 43350 | 44798 | + | GH1 |
| pfam | MGYG000000896_19 | MGYG000000896_19_37 | 44810 | 45655 | + | Hydrolase_3 |
| TC | MGYG000000896_19 | MGYG000000896_19_38 | 45796 | 46332 | + | 4.A.1.2.6 |
Gene ID: MGYG000000896_19_33
Type: TC
Location: 37970 - 40738 (-)
Type: TC
Location: 37970 - 40738 (-)
Gene ID: MGYG000000896_19_34
Type: STP
Location: 41178 - 41861 (+)
Type: STP
Location: 41178 - 41861 (+)
Gene ID: MGYG000000896_19_35
Type: TF
Location: 42293 - 43147 (-)
Type: TF
Location: 42293 - 43147 (-)
Gene ID: MGYG000000896_19_36
Type: CAZyme
Location: 43350 - 44798 (+)
Type: CAZyme
Location: 43350 - 44798 (+)
Gene ID: MGYG000000896_19_37
Type: pfam
Location: 44810 - 45655 (+)
Type: pfam
Location: 44810 - 45655 (+)
Gene ID: MGYG000000896_19_38
Type: TC
Location: 45796 - 46332 (+)
Type: TC
Location: 45796 - 46332 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900540895
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.