Cluster: MGYG000000885_CGC7
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: MGYG000000885
- CGC Family ID: CGCFAM_00008
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000000885_5 | MGYG000000885_5_24 | 31738 | 32505 | - | 3.A.1.103.1 |
| TC | MGYG000000885_5 | MGYG000000885_5_25 | 32518 | 33363 | - | 3.A.1.103.6 |
| CAZyme | MGYG000000885_5 | MGYG000000885_5_26 | 33525 | 34454 | + | GT81 |
| CAZyme | MGYG000000885_5 | MGYG000000885_5_27 | 34486 | 36327 | - | GT2 |
| pfam | MGYG000000885_5 | MGYG000000885_5_28 | 36360 | 37547 | - | LicD |
| CAZyme | MGYG000000885_5 | MGYG000000885_5_29 | 37647 | 39524 | - | GT2 |
| pfam | MGYG000000885_5 | MGYG000000885_5_30 | 39559 | 41607 | - | DUF6541 |
| pfam | MGYG000000885_5 | MGYG000000885_5_31 | 41636 | 41959 | - | DUF2304 |
| CAZyme | MGYG000000885_5 | MGYG000000885_5_32 | 41965 | 42657 | - | GT2 |
Gene ID: MGYG000000885_5_24
Type: TC
Location: 31738 - 32505 (-)
Type: TC
Location: 31738 - 32505 (-)
Gene ID: MGYG000000885_5_25
Type: TC
Location: 32518 - 33363 (-)
Type: TC
Location: 32518 - 33363 (-)
Gene ID: MGYG000000885_5_26
Type: CAZyme
Location: 33525 - 34454 (+)
Type: CAZyme
Location: 33525 - 34454 (+)
Gene ID: MGYG000000885_5_27
Type: CAZyme
Location: 34486 - 36327 (-)
Type: CAZyme
Location: 34486 - 36327 (-)
Gene ID: MGYG000000885_5_28
Type: pfam
Location: 36360 - 37547 (-)
Type: pfam
Location: 36360 - 37547 (-)
Gene ID: MGYG000000885_5_29
Type: CAZyme
Location: 37647 - 39524 (-)
Type: CAZyme
Location: 37647 - 39524 (-)
Gene ID: MGYG000000885_5_30
Type: pfam
Location: 39559 - 41607 (-)
Type: pfam
Location: 39559 - 41607 (-)
Gene ID: MGYG000000885_5_31
Type: pfam
Location: 41636 - 41959 (-)
Type: pfam
Location: 41636 - 41959 (-)
Gene ID: MGYG000000885_5_32
Type: CAZyme
Location: 41965 - 42657 (-)
Type: CAZyme
Location: 41965 - 42657 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541785
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000000885_5_25 | vegan > omnivore | 1.75452 | 0.00229 |
| MGYG000000885_5_26 | vegan > omnivore | 1.50944 | 0.00237 |
| MGYG000000885_5_27 | vegan > omnivore | 17.18090 | 0.00237 |
| MGYG000000885_5_27 | vegetarian > omnivore | 12.62436 | 0.02969 |
| MGYG000000885_5_28 | vegan > omnivore | 17.47173 | 0.00237 |
| MGYG000000885_5_29 | vegan > omnivore | 9.57405 | 0.00237 |