Cluster: MGYG000000885_CGC3
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000000885
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000000885_1 | MGYG000000885_1_106 | 127118 | 128287 | - | CE9 |
| STP | MGYG000000885_1 | MGYG000000885_1_107 | 128404 | 129570 | - | SIS | SIS |
| TF | MGYG000000885_1 | MGYG000000885_1_108 | 129682 | 130416 | - | GntR |
| TC | MGYG000000885_1 | MGYG000000885_1_109 | 130504 | 130932 | - | 4.A.6.1.8 |
| NULL(UNKNOWN) | MGYG000000885_1 | MGYG000000885_1_110 | 131014 | 131637 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000000885_1 | MGYG000000885_1_111 | 131826 | 132665 | - | 4.A.6.1.18 |
| TC | MGYG000000885_1 | MGYG000000885_1_112 | 132655 | 133542 | - | 4.A.6.1.18 |
| TC | MGYG000000885_1 | MGYG000000885_1_113 | 133636 | 134100 | - | 4.A.6.1.18 |
| CAZyme | MGYG000000885_1 | MGYG000000885_1_114 | 134103 | 135899 | - | GH35 |
| pfam | MGYG000000885_1 | MGYG000000885_1_115 | 136386 | 136859 | - | DUF386 |
| CAZyme | MGYG000000885_1 | MGYG000000885_1_116 | 136892 | 138061 | - | CE9 |
| TF | MGYG000000885_1 | MGYG000000885_1_117 | 138205 | 138936 | - | GntR |
| TC | MGYG000000885_1 | MGYG000000885_1_118 | 139169 | 140656 | - | 4.A.1.1.7 |
Gene ID: MGYG000000885_1_106
Type: CAZyme
Location: 127118 - 128287 (-)
Type: CAZyme
Location: 127118 - 128287 (-)
Gene ID: MGYG000000885_1_107
Type: STP
Location: 128404 - 129570 (-)
Type: STP
Location: 128404 - 129570 (-)
Gene ID: MGYG000000885_1_108
Type: TF
Location: 129682 - 130416 (-)
Type: TF
Location: 129682 - 130416 (-)
Gene ID: MGYG000000885_1_109
Type: TC
Location: 130504 - 130932 (-)
Type: TC
Location: 130504 - 130932 (-)
Gene ID: MGYG000000885_1_110
Type:
Location: 131014 - 131637 (-)
Type:
Location: 131014 - 131637 (-)
Gene ID: MGYG000000885_1_111
Type: TC
Location: 131826 - 132665 (-)
Type: TC
Location: 131826 - 132665 (-)
Gene ID: MGYG000000885_1_112
Type: TC
Location: 132655 - 133542 (-)
Type: TC
Location: 132655 - 133542 (-)
Gene ID: MGYG000000885_1_113
Type: TC
Location: 133636 - 134100 (-)
Type: TC
Location: 133636 - 134100 (-)
Gene ID: MGYG000000885_1_114
Type: CAZyme
Location: 134103 - 135899 (-)
Type: CAZyme
Location: 134103 - 135899 (-)
Gene ID: MGYG000000885_1_115
Type: pfam
Location: 136386 - 136859 (-)
Type: pfam
Location: 136386 - 136859 (-)
Gene ID: MGYG000000885_1_116
Type: CAZyme
Location: 136892 - 138061 (-)
Type: CAZyme
Location: 136892 - 138061 (-)
Gene ID: MGYG000000885_1_117
Type: TF
Location: 138205 - 138936 (-)
Type: TF
Location: 138205 - 138936 (-)
Gene ID: MGYG000000885_1_118
Type: TC
Location: 139169 - 140656 (-)
Type: TC
Location: 139169 - 140656 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541785
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000000885_1_111 | vegetarian > vegan | 2.56756 | 0.00110 |
| MGYG000000885_1_112 | vegetarian > vegan | 2.53529 | 0.04966 |
| MGYG000000885_1_113 | vegetarian > vegan | 3.43984 | 0.00110 |
| MGYG000000885_1_114 | vegetarian > vegan | 2.81888 | 0.00110 |
| MGYG000000885_1_117 | vegetarian > vegan | 3.41589 | 0.00110 |