Cluster: MGYG000000885_CGC15
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000000885
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000000885_38 | MGYG000000885_38_4 | 3460 | 4860 | + | GH1 |
| TC | MGYG000000885_38 | MGYG000000885_38_5 | 4981 | 6324 | + | 4.A.3.2.2 |
| TC | MGYG000000885_38 | MGYG000000885_38_6 | 6486 | 6788 | + | 4.A.3.2.9 |
| TC | MGYG000000885_38 | MGYG000000885_38_7 | 6798 | 7130 | + | 4.A.3.2.3 |
| pfam | MGYG000000885_38 | MGYG000000885_38_8 | 7372 | 8325 | + | ROK |
| pfam | MGYG000000885_38 | MGYG000000885_38_9 | 8492 | 9415 | + | DHH | DHHA2 |
| TC | MGYG000000885_38 | MGYG000000885_38_10 | 9684 | 11042 | + | 2.A.33.1.1 |
Gene ID: MGYG000000885_38_4
Type: CAZyme
Location: 3460 - 4860 (+)
Type: CAZyme
Location: 3460 - 4860 (+)
Gene ID: MGYG000000885_38_5
Type: TC
Location: 4981 - 6324 (+)
Type: TC
Location: 4981 - 6324 (+)
Gene ID: MGYG000000885_38_6
Type: TC
Location: 6486 - 6788 (+)
Type: TC
Location: 6486 - 6788 (+)
Gene ID: MGYG000000885_38_7
Type: TC
Location: 6798 - 7130 (+)
Type: TC
Location: 6798 - 7130 (+)
Gene ID: MGYG000000885_38_8
Type: pfam
Location: 7372 - 8325 (+)
Type: pfam
Location: 7372 - 8325 (+)
Gene ID: MGYG000000885_38_9
Type: pfam
Location: 8492 - 9415 (+)
Type: pfam
Location: 8492 - 9415 (+)
Gene ID: MGYG000000885_38_10
Type: TC
Location: 9684 - 11042 (+)
Type: TC
Location: 9684 - 11042 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541785
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.