Cluster: MGYG000000879_CGC4
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000000879
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000000879_2 | MGYG000000879_2_77 | 92350 | 93567 | - | GT4 |
| pfam | MGYG000000879_2 | MGYG000000879_2_78 | 93582 | 94346 | - | BcrAD_BadFG |
| pfam | MGYG000000879_2 | MGYG000000879_2_79 | 94397 | 95560 | - | HGD-D |
| TC | MGYG000000879_2 | MGYG000000879_2_80 | 95637 | 96422 | - | 3.A.1.5.36 |
| TC | MGYG000000879_2 | MGYG000000879_2_81 | 96412 | 97407 | - | 3.A.1.5.37 |
| TC | MGYG000000879_2 | MGYG000000879_2_82 | 97411 | 98241 | - | 3.A.1.5.39 |
| TC | MGYG000000879_2 | MGYG000000879_2_83 | 98238 | 99191 | - | 3.A.1.5.39 |
| TC | MGYG000000879_2 | MGYG000000879_2_84 | 99280 | 100890 | - | 3.A.1.5.11 |
| pfam | MGYG000000879_2 | MGYG000000879_2_85 | 101075 | 102358 | - | HGD-D |
| TC | MGYG000000879_2 | MGYG000000879_2_86 | 102788 | 103858 | - | 3.A.1.1.3 |
| TC | MGYG000000879_2 | MGYG000000879_2_87 | 103862 | 105304 | - | 3.A.1.8.1 |
Gene ID: MGYG000000879_2_77
Type: CAZyme
Location: 92350 - 93567 (-)
Type: CAZyme
Location: 92350 - 93567 (-)
Gene ID: MGYG000000879_2_78
Type: pfam
Location: 93582 - 94346 (-)
Type: pfam
Location: 93582 - 94346 (-)
Gene ID: MGYG000000879_2_79
Type: pfam
Location: 94397 - 95560 (-)
Type: pfam
Location: 94397 - 95560 (-)
Gene ID: MGYG000000879_2_80
Type: TC
Location: 95637 - 96422 (-)
Type: TC
Location: 95637 - 96422 (-)
Gene ID: MGYG000000879_2_81
Type: TC
Location: 96412 - 97407 (-)
Type: TC
Location: 96412 - 97407 (-)
Gene ID: MGYG000000879_2_82
Type: TC
Location: 97411 - 98241 (-)
Type: TC
Location: 97411 - 98241 (-)
Gene ID: MGYG000000879_2_83
Type: TC
Location: 98238 - 99191 (-)
Type: TC
Location: 98238 - 99191 (-)
Gene ID: MGYG000000879_2_84
Type: TC
Location: 99280 - 100890 (-)
Type: TC
Location: 99280 - 100890 (-)
Gene ID: MGYG000000879_2_85
Type: pfam
Location: 101075 - 102358 (-)
Type: pfam
Location: 101075 - 102358 (-)
Gene ID: MGYG000000879_2_86
Type: TC
Location: 102788 - 103858 (-)
Type: TC
Location: 102788 - 103858 (-)
Gene ID: MGYG000000879_2_87
Type: TC
Location: 103862 - 105304 (-)
Type: TC
Location: 103862 - 105304 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000000879_2_77 | vegan > omnivore | 1.62083 | 0.01057 |
| MGYG000000879_2_80 | vegan > omnivore | 2.83772 | 0.01057 |
| MGYG000000879_2_80 | vegetarian > omnivore | 1.00689 | 0.04890 |
| MGYG000000879_2_81 | vegan > omnivore | 1.23318 | 0.01057 |
| MGYG000000879_2_82 | vegan > omnivore | 2.93854 | 0.01057 |
| MGYG000000879_2_82 | vegetarian > omnivore | 1.20353 | 0.04890 |
| MGYG000000879_2_83 | vegan > omnivore | 2.76020 | 0.01057 |
| MGYG000000879_2_83 | vegetarian > omnivore | 1.17811 | 0.04890 |
| MGYG000000879_2_84 | vegan > omnivore | 3.28002 | 0.01057 |
| MGYG000000879_2_84 | vegetarian > omnivore | 1.06119 | 0.04890 |