Cluster: MGYG000000870_CGC9
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000000870
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000000870_3 | MGYG000000870_3_87 | 109156 | 110259 | + | 9.B.146.1.3 |
| pfam | MGYG000000870_3 | MGYG000000870_3_88 | 110267 | 111577 | + | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| pfam | MGYG000000870_3 | MGYG000000870_3_89 | 111555 | 112412 | + | LysM | LysM |
| TC | MGYG000000870_3 | MGYG000000870_3_90 | 112440 | 113582 | + | 2.A.103.1.1 |
| CAZyme | MGYG000000870_3 | MGYG000000870_3_91 | 113579 | 114703 | + | GT28 |
Gene ID: MGYG000000870_3_87
Type: TC
Location: 109156 - 110259 (+)
Type: TC
Location: 109156 - 110259 (+)
Gene ID: MGYG000000870_3_88
Type: pfam
Location: 110267 - 111577 (+)
Type: pfam
Location: 110267 - 111577 (+)
Gene ID: MGYG000000870_3_89
Type: pfam
Location: 111555 - 112412 (+)
Type: pfam
Location: 111555 - 112412 (+)
Gene ID: MGYG000000870_3_90
Type: TC
Location: 112440 - 113582 (+)
Type: TC
Location: 112440 - 113582 (+)
Gene ID: MGYG000000870_3_91
Type: CAZyme
Location: 113579 - 114703 (+)
Type: CAZyme
Location: 113579 - 114703 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia sp004167605
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000000870_3_87 | vegetarian > omnivore | 2.53642 | 0.04220 |
| MGYG000000870_3_87 | vegetarian > vegan | 1.55919 | 0.01794 |
| MGYG000000870_3_88 | vegetarian > omnivore | 1.96888 | 0.04220 |
| MGYG000000870_3_88 | vegetarian > vegan | 1.67749 | 0.01794 |