Cluster: MGYG000000870_CGC36
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 4
- Substrate:
- Genome ID: MGYG000000870
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000000870_26 | MGYG000000870_26_6 | 6341 | 6814 | - | CBM50 |
| pfam | MGYG000000870_26 | MGYG000000870_26_7 | 6883 | 7698 | - | TatD_DNase |
| pfam | MGYG000000870_26 | MGYG000000870_26_8 | 7805 | 8890 | + | LpxR |
| CAZyme | MGYG000000870_26 | MGYG000000870_26_9 | 9033 | 12833 | + | CBM32 | GH2 |
| pfam | MGYG000000870_26 | MGYG000000870_26_10 | 13180 | 13872 | - | PEP-CTERM |
| NULL(UNKNOWN) | MGYG000000870_26 | MGYG000000870_26_11 | 13885 | 14895 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000000870_26 | MGYG000000870_26_12 | 15015 | 16415 | - | GH29 |
| STP | MGYG000000870_26 | MGYG000000870_26_13 | 16805 | 19483 | + | HATPase_c | HisKA |
| TF | MGYG000000870_26 | MGYG000000870_26_14 | 19502 | 20200 | + | Trans_reg_C |
| TC | MGYG000000870_26 | MGYG000000870_26_15 | 20354 | 21124 | + | 1.B.71.1.5 |
| TC | MGYG000000870_26 | MGYG000000870_26_16 | 21239 | 22939 | + | 3.A.3.7.2 |
| TC | MGYG000000870_26 | MGYG000000870_26_17 | 22970 | 25084 | + | 3.A.3.7.2 |
| TC | MGYG000000870_26 | MGYG000000870_26_18 | 25114 | 25680 | + | 3.A.3.7.2 |
| CAZyme | MGYG000000870_26 | MGYG000000870_26_19 | 25830 | 27434 | - | GH27 |
| TC | MGYG000000870_26 | MGYG000000870_26_20 | 27661 | 30204 | + | 3.A.9.1.2 |
Gene ID: MGYG000000870_26_6
Type: CAZyme
Location: 6341 - 6814 (-)
Type: CAZyme
Location: 6341 - 6814 (-)
Gene ID: MGYG000000870_26_7
Type: pfam
Location: 6883 - 7698 (-)
Type: pfam
Location: 6883 - 7698 (-)
Gene ID: MGYG000000870_26_8
Type: pfam
Location: 7805 - 8890 (+)
Type: pfam
Location: 7805 - 8890 (+)
Gene ID: MGYG000000870_26_9
Type: CAZyme
Location: 9033 - 12833 (+)
Type: CAZyme
Location: 9033 - 12833 (+)
Gene ID: MGYG000000870_26_10
Type: pfam
Location: 13180 - 13872 (-)
Type: pfam
Location: 13180 - 13872 (-)
Gene ID: MGYG000000870_26_11
Type:
Location: 13885 - 14895 (-)
Type:
Location: 13885 - 14895 (-)
Gene ID: MGYG000000870_26_12
Type: CAZyme
Location: 15015 - 16415 (-)
Type: CAZyme
Location: 15015 - 16415 (-)
Gene ID: MGYG000000870_26_13
Type: STP
Location: 16805 - 19483 (+)
Type: STP
Location: 16805 - 19483 (+)
Gene ID: MGYG000000870_26_14
Type: TF
Location: 19502 - 20200 (+)
Type: TF
Location: 19502 - 20200 (+)
Gene ID: MGYG000000870_26_15
Type: TC
Location: 20354 - 21124 (+)
Type: TC
Location: 20354 - 21124 (+)
Gene ID: MGYG000000870_26_16
Type: TC
Location: 21239 - 22939 (+)
Type: TC
Location: 21239 - 22939 (+)
Gene ID: MGYG000000870_26_17
Type: TC
Location: 22970 - 25084 (+)
Type: TC
Location: 22970 - 25084 (+)
Gene ID: MGYG000000870_26_18
Type: TC
Location: 25114 - 25680 (+)
Type: TC
Location: 25114 - 25680 (+)
Gene ID: MGYG000000870_26_19
Type: CAZyme
Location: 25830 - 27434 (-)
Type: CAZyme
Location: 25830 - 27434 (-)
Gene ID: MGYG000000870_26_20
Type: TC
Location: 27661 - 30204 (+)
Type: TC
Location: 27661 - 30204 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia sp004167605
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.