Cluster: MGYG000000870_CGC32
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000000870
- CGC Family ID: CGCFAM_01384
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000000870_18 | MGYG000000870_18_9 | 10394 | 11545 | + | 2.A.1.26.1 |
| NULL(UNKNOWN) | MGYG000000870_18 | MGYG000000870_18_10 | 11639 | 12616 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | MGYG000000870_18 | MGYG000000870_18_11 | 12613 | 13755 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000000870_18 | MGYG000000870_18_12 | 13976 | 16360 | + | GH95 |
| CAZyme | MGYG000000870_18 | MGYG000000870_18_13 | 16727 | 18172 | - | GH109 |
| NULL(UNKNOWN) | MGYG000000870_18 | MGYG000000870_18_14 | 18690 | 19295 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000000870_18 | MGYG000000870_18_15 | 19433 | 20698 | - | 1.I.1.1.3 |
| NULL(UNKNOWN) | MGYG000000870_18 | MGYG000000870_18_16 | 21292 | 22542 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000000870_18 | MGYG000000870_18_17 | 22785 | 23393 | - | 4.F.1.1.8 |
| pfam | MGYG000000870_18 | MGYG000000870_18_18 | 23811 | 26123 | - | BRCT | DNA_ligase_aden | DNA_ligase_ZBD | DNA_ligase_OB | PTCB-BRCT | Nlig-Ia |
| CAZyme | MGYG000000870_18 | MGYG000000870_18_19 | 26148 | 27809 | - | GH29 |
Gene ID: MGYG000000870_18_9
Type: TC
Location: 10394 - 11545 (+)
Type: TC
Location: 10394 - 11545 (+)
Gene ID: MGYG000000870_18_10
Type:
Location: 11639 - 12616 (-)
Type:
Location: 11639 - 12616 (-)
Gene ID: MGYG000000870_18_11
Type:
Location: 12613 - 13755 (-)
Type:
Location: 12613 - 13755 (-)
Gene ID: MGYG000000870_18_12
Type: CAZyme
Location: 13976 - 16360 (+)
Type: CAZyme
Location: 13976 - 16360 (+)
Gene ID: MGYG000000870_18_13
Type: CAZyme
Location: 16727 - 18172 (-)
Type: CAZyme
Location: 16727 - 18172 (-)
Gene ID: MGYG000000870_18_14
Type:
Location: 18690 - 19295 (-)
Type:
Location: 18690 - 19295 (-)
Gene ID: MGYG000000870_18_15
Type: TC
Location: 19433 - 20698 (-)
Type: TC
Location: 19433 - 20698 (-)
Gene ID: MGYG000000870_18_16
Type:
Location: 21292 - 22542 (+)
Type:
Location: 21292 - 22542 (+)
Gene ID: MGYG000000870_18_17
Type: TC
Location: 22785 - 23393 (-)
Type: TC
Location: 22785 - 23393 (-)
Gene ID: MGYG000000870_18_18
Type: pfam
Location: 23811 - 26123 (-)
Type: pfam
Location: 23811 - 26123 (-)
Gene ID: MGYG000000870_18_19
Type: CAZyme
Location: 26148 - 27809 (-)
Type: CAZyme
Location: 26148 - 27809 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia sp004167605
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.