Cluster: MGYG000000870_CGC23
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 8
- Substrate:
- Genome ID: MGYG000000870
- CGC Family ID: CGCFAM_01284
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000000870_10 | MGYG000000870_10_22 | 19789 | 20766 | - | GT8 |
| CAZyme | MGYG000000870_10 | MGYG000000870_10_23 | 20785 | 21810 | - | GT2 |
| CAZyme | MGYG000000870_10 | MGYG000000870_10_24 | 21794 | 22756 | - | GT9 |
| pfam | MGYG000000870_10 | MGYG000000870_10_25 | 22777 | 23763 | - | 3Beta_HSD | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd |
| CAZyme | MGYG000000870_10 | MGYG000000870_10_26 | 24066 | 25196 | + | GT2 |
| NULL(UNKNOWN) | MGYG000000870_10 | MGYG000000870_10_27 | 25245 | 26027 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000000870_10 | MGYG000000870_10_28 | 26024 | 27295 | - | GT4 |
| CAZyme | MGYG000000870_10 | MGYG000000870_10_29 | 27319 | 28404 | - | GT8 |
| CAZyme | MGYG000000870_10 | MGYG000000870_10_30 | 29148 | 30146 | + | GT10 |
| TC | MGYG000000870_10 | MGYG000000870_10_31 | 30236 | 32311 | + | 9.B.97.5.1 |
| CAZyme | MGYG000000870_10 | MGYG000000870_10_32 | 32463 | 33494 | + | GT10 |
| NULL(UNKNOWN) | MGYG000000870_10 | MGYG000000870_10_33 | 33537 | 34049 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | MGYG000000870_10 | MGYG000000870_10_34 | 34137 | 34376 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000000870_10 | MGYG000000870_10_35 | 34493 | 36358 | - | 2.A.47.4.8 |
Gene ID: MGYG000000870_10_22
Type: CAZyme
Location: 19789 - 20766 (-)
Type: CAZyme
Location: 19789 - 20766 (-)
Gene ID: MGYG000000870_10_23
Type: CAZyme
Location: 20785 - 21810 (-)
Type: CAZyme
Location: 20785 - 21810 (-)
Gene ID: MGYG000000870_10_24
Type: CAZyme
Location: 21794 - 22756 (-)
Type: CAZyme
Location: 21794 - 22756 (-)
Gene ID: MGYG000000870_10_25
Type: pfam
Location: 22777 - 23763 (-)
Type: pfam
Location: 22777 - 23763 (-)
Gene ID: MGYG000000870_10_26
Type: CAZyme
Location: 24066 - 25196 (+)
Type: CAZyme
Location: 24066 - 25196 (+)
Gene ID: MGYG000000870_10_27
Type:
Location: 25245 - 26027 (+)
Type:
Location: 25245 - 26027 (+)
Gene ID: MGYG000000870_10_28
Type: CAZyme
Location: 26024 - 27295 (-)
Type: CAZyme
Location: 26024 - 27295 (-)
Gene ID: MGYG000000870_10_29
Type: CAZyme
Location: 27319 - 28404 (-)
Type: CAZyme
Location: 27319 - 28404 (-)
Gene ID: MGYG000000870_10_30
Type: CAZyme
Location: 29148 - 30146 (+)
Type: CAZyme
Location: 29148 - 30146 (+)
Gene ID: MGYG000000870_10_31
Type: TC
Location: 30236 - 32311 (+)
Type: TC
Location: 30236 - 32311 (+)
Gene ID: MGYG000000870_10_32
Type: CAZyme
Location: 32463 - 33494 (+)
Type: CAZyme
Location: 32463 - 33494 (+)
Gene ID: MGYG000000870_10_33
Type:
Location: 33537 - 34049 (-)
Type:
Location: 33537 - 34049 (-)
Gene ID: MGYG000000870_10_34
Type:
Location: 34137 - 34376 (-)
Type:
Location: 34137 - 34376 (-)
Gene ID: MGYG000000870_10_35
Type: TC
Location: 34493 - 36358 (-)
Type: TC
Location: 34493 - 36358 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia sp004167605
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000000870_10_25 | vegetarian > vegan | 1.10195 | 0.01794 |
| MGYG000000870_10_32 | vegetarian > omnivore | 1.25585 | 0.01386 |
| MGYG000000870_10_34 | vegetarian > vegan | 1.27537 | 0.01794 |