Cluster: MGYG000000858_CGC9
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 4
- Substrate:
- Genome ID: MGYG000000858
- CGC Family ID: CGCFAM_00011
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000000858_11 | MGYG000000858_11_7 | 5761 | 6573 | + | 3.A.1.103.4 |
| TC | MGYG000000858_11 | MGYG000000858_11_8 | 6583 | 7338 | + | 3.A.1.103.1 |
| CAZyme | MGYG000000858_11 | MGYG000000858_11_9 | 7340 | 8596 | + | GT2 |
| CAZyme | MGYG000000858_11 | MGYG000000858_11_10 | 8636 | 9697 | + | GT2 |
| CAZyme | MGYG000000858_11 | MGYG000000858_11_11 | 9719 | 10954 | + | GT4 |
| pfam | MGYG000000858_11 | MGYG000000858_11_12 | 11011 | 11688 | + | IU_nuc_hydro |
| CAZyme | MGYG000000858_11 | MGYG000000858_11_13 | 11563 | 12525 | - | GT81 |
| TC | MGYG000000858_11 | MGYG000000858_11_14 | 12648 | 13316 | + | 3.A.1.103.5 |
Gene ID: MGYG000000858_11_7
Type: TC
Location: 5761 - 6573 (+)
Type: TC
Location: 5761 - 6573 (+)
Gene ID: MGYG000000858_11_8
Type: TC
Location: 6583 - 7338 (+)
Type: TC
Location: 6583 - 7338 (+)
Gene ID: MGYG000000858_11_9
Type: CAZyme
Location: 7340 - 8596 (+)
Type: CAZyme
Location: 7340 - 8596 (+)
Gene ID: MGYG000000858_11_10
Type: CAZyme
Location: 8636 - 9697 (+)
Type: CAZyme
Location: 8636 - 9697 (+)
Gene ID: MGYG000000858_11_11
Type: CAZyme
Location: 9719 - 10954 (+)
Type: CAZyme
Location: 9719 - 10954 (+)
Gene ID: MGYG000000858_11_12
Type: pfam
Location: 11011 - 11688 (+)
Type: pfam
Location: 11011 - 11688 (+)
Gene ID: MGYG000000858_11_13
Type: CAZyme
Location: 11563 - 12525 (-)
Type: CAZyme
Location: 11563 - 12525 (-)
Gene ID: MGYG000000858_11_14
Type: TC
Location: 12648 - 13316 (+)
Type: TC
Location: 12648 - 13316 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900542155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000000858_11_8 | vegetarian > vegan | 1.18468 | 0.02148 |
| MGYG000000858_11_10 | vegetarian > omnivore | 2.34601 | 0.03783 |
| MGYG000000858_11_10 | vegetarian > vegan | 6.13933 | 0.01243 |
| MGYG000000858_11_11 | vegetarian > omnivore | 1.96820 | 0.03783 |
| MGYG000000858_11_11 | vegetarian > vegan | 3.69575 | 0.01243 |