Cluster: MGYG000000833_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000000833
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000000833_13 | MGYG000000833_13_11 | 10812 | 17225 | - | GH31_18 |
| TF | MGYG000000833_13 | MGYG000000833_13_12 | 17741 | 18181 | - | MarR |
| NULL(UNKNOWN) | MGYG000000833_13 | MGYG000000833_13_13 | 18286 | 18612 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000000833_13 | MGYG000000833_13_14 | 18808 | 19635 | - | 4.A.6.1.6 |
| TC | MGYG000000833_13 | MGYG000000833_13_15 | 19635 | 20492 | - | 4.A.6.1.1 |
| TC | MGYG000000833_13 | MGYG000000833_13_16 | 20565 | 21053 | - | 4.A.6.1.9 |
Gene ID: MGYG000000833_13_11
Type: CAZyme
Location: 10812 - 17225 (-)
Type: CAZyme
Location: 10812 - 17225 (-)
Gene ID: MGYG000000833_13_12
Type: TF
Location: 17741 - 18181 (-)
Type: TF
Location: 17741 - 18181 (-)
Gene ID: MGYG000000833_13_13
Type:
Location: 18286 - 18612 (-)
Type:
Location: 18286 - 18612 (-)
Gene ID: MGYG000000833_13_14
Type: TC
Location: 18808 - 19635 (-)
Type: TC
Location: 18808 - 19635 (-)
Gene ID: MGYG000000833_13_15
Type: TC
Location: 19635 - 20492 (-)
Type: TC
Location: 19635 - 20492 (-)
Gene ID: MGYG000000833_13_16
Type: TC
Location: 20565 - 21053 (-)
Type: TC
Location: 20565 - 21053 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp003475325
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000000833_13_11 | vegetarian > omnivore | 1.34559 | 0.01057 |
| MGYG000000833_13_11 | vegetarian > vegan | 2.04614 | 0.01195 |