Cluster: MGYG000000789_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000000789
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000000789_19 | MGYG000000789_19_14 | 18237 | 18986 | + | 9.B.18.1.2 |
| CAZyme | MGYG000000789_19 | MGYG000000789_19_15 | 18986 | 19762 | + | GT26 |
| TC | MGYG000000789_19 | MGYG000000789_19_16 | 19763 | 20821 | + | 9.B.18.2.1 |
| pfam | MGYG000000789_19 | MGYG000000789_19_17 | 20823 | 22040 | + | Epimerase | Polysacc_synt_C |
| pfam | MGYG000000789_19 | MGYG000000789_19_18 | 22045 | 23226 | + | Epimerase_2 |
| CAZyme | MGYG000000789_19 | MGYG000000789_19_19 | 23226 | 24407 | + | GT4 |
Gene ID: MGYG000000789_19_14
Type: TC
Location: 18237 - 18986 (+)
Type: TC
Location: 18237 - 18986 (+)
Gene ID: MGYG000000789_19_15
Type: CAZyme
Location: 18986 - 19762 (+)
Type: CAZyme
Location: 18986 - 19762 (+)
Gene ID: MGYG000000789_19_16
Type: TC
Location: 19763 - 20821 (+)
Type: TC
Location: 19763 - 20821 (+)
Gene ID: MGYG000000789_19_17
Type: pfam
Location: 20823 - 22040 (+)
Type: pfam
Location: 20823 - 22040 (+)
Gene ID: MGYG000000789_19_18
Type: pfam
Location: 22045 - 23226 (+)
Type: pfam
Location: 22045 - 23226 (+)
Gene ID: MGYG000000789_19_19
Type: CAZyme
Location: 23226 - 24407 (+)
Type: CAZyme
Location: 23226 - 24407 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900542175
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000000789_19_17 | vegetarian > omnivore | 1.25807 | 0.03851 |
| MGYG000000789_19_17 | vegetarian > vegan | 1.80685 | 0.00857 |
| MGYG000000789_19_18 | vegetarian > omnivore | 1.01116 | 0.02258 |