dbCAN HGM

Cluster: MGYG000000770_CGC2

Cluster Details
Gene Composition
Taxonomic Lineage
Gene level Read Mapping
Explore Read Mapping

🧬 Cluster Details

Gene Count: 12
CAZyme Count: 7
Substrate:
Genome ID: MGYG000000770
Continent: Asia
Source Study: Almeida et al., 2021 →

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	MGYG000000770_1	MGYG000000770_1_219	246231	247172	+	2.A.7.18.1
pfam	MGYG000000770_1	MGYG000000770_1_220	247234	249375	-	Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Peptidase_C39_2 \| Choline_bind_3 \| Choline_bind_3 \| Choline_bind_3 \| Choline_bind_3
CAZyme	MGYG000000770_1	MGYG000000770_1_221	249476	251209	-	GH25
pfam	MGYG000000770_1	MGYG000000770_1_222	251475	253685	-	Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_3 \| Choline_bind_3 \| Choline_bind_3 \| Choline_bind_3
pfam	MGYG000000770_1	MGYG000000770_1_223	253766	255022	-	Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_2 \| Choline_bind_3 \| Choline_bind_3 \| Choline_bind_3 \| Choline_bind_3
CAZyme	MGYG000000770_1	MGYG000000770_1_224	255336	257822	-	GT2 \| GT2
CAZyme	MGYG000000770_1	MGYG000000770_1_225	257823	258890	-	GT2
CAZyme	MGYG000000770_1	MGYG000000770_1_226	258903	260021	-	GT2
CAZyme	MGYG000000770_1	MGYG000000770_1_227	260096	261136	-	GT2
CAZyme	MGYG000000770_1	MGYG000000770_1_228	261143	262246	-	GT2
pfam	MGYG000000770_1	MGYG000000770_1_229	262359	263489	+	Acyl_transf_3
CAZyme	MGYG000000770_1	MGYG000000770_1_230	263660	264679	+	GT2

Gene ID: MGYG000000770_1_219
Type: TC
Location: 246231 - 247172 (+)

Gene ID: MGYG000000770_1_220
Type: pfam
Location: 247234 - 249375 (-)

Gene ID: MGYG000000770_1_221
Type: CAZyme
Location: 249476 - 251209 (-)

Gene ID: MGYG000000770_1_222
Type: pfam
Location: 251475 - 253685 (-)

Gene ID: MGYG000000770_1_223
Type: pfam
Location: 253766 - 255022 (-)

Gene ID: MGYG000000770_1_224
Type: CAZyme
Location: 255336 - 257822 (-)

Gene ID: MGYG000000770_1_225
Type: CAZyme
Location: 257823 - 258890 (-)

Gene ID: MGYG000000770_1_226
Type: CAZyme
Location: 258903 - 260021 (-)

Gene ID: MGYG000000770_1_227
Type: CAZyme
Location: 260096 - 261136 (-)

Gene ID: MGYG000000770_1_228
Type: CAZyme
Location: 261143 - 262246 (-)

Gene ID: MGYG000000770_1_229
Type: pfam
Location: 262359 - 263489 (+)

Gene ID: MGYG000000770_1_230
Type: CAZyme
Location: 263660 - 264679 (+)

Taxonomic Lineage

Domain

Bacteria

→

Phylum

Actinomycetota

→

Class

Coriobacteriia

→

Order

Coriobacteriales

→

Family

Coriobacteriaceae

→

Genus

Collinsella

→

Species

Collinsella sp900544095

Gene Level Read Mapping

Diet (De Filippis et al., 2019)
Diet (Huang et al., 2024)
IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID	Condition Pair	log2FC	FDR P-value
MGYG000000770_1_229	vegan > omnivore	1.79424	0.00566
MGYG000000770_1_229	vegetarian > omnivore	1.44880	0.02941

Gene ID	Condition Pair	log2FC	FDR P-value
MGYG000000770_1_221	vegan > omnivore	1.56460	0.02243
MGYG000000770_1_222	vegan > omnivore	1.25856	0.04628

🧭 Explore Read Mapping of CGC

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