Cluster: MGYG000000716_CGC15
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 6
- Substrate:
- Genome ID: MGYG000000716
- CGC Family ID: CGCFAM_00011
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000000716_46 | MGYG000000716_46_6 | 5298 | 7289 | - | GT2 |
| CAZyme | MGYG000000716_46 | MGYG000000716_46_7 | 7484 | 8620 | + | GT2 |
| TC | MGYG000000716_46 | MGYG000000716_46_8 | 8891 | 9703 | + | 3.A.1.103.4 |
| TC | MGYG000000716_46 | MGYG000000716_46_9 | 9713 | 10468 | + | 3.A.1.103.1 |
| CAZyme | MGYG000000716_46 | MGYG000000716_46_10 | 10470 | 11579 | + | GT2 |
| CAZyme | MGYG000000716_46 | MGYG000000716_46_11 | 11588 | 12646 | + | GT2 |
| CAZyme | MGYG000000716_46 | MGYG000000716_46_12 | 12668 | 13903 | + | GT4 |
| CAZyme | MGYG000000716_46 | MGYG000000716_46_13 | 14019 | 14981 | - | GT81 |
| TC | MGYG000000716_46 | MGYG000000716_46_14 | 15104 | 15772 | + | 3.A.1.103.5 |
Gene ID: MGYG000000716_46_6
Type: CAZyme
Location: 5298 - 7289 (-)
Type: CAZyme
Location: 5298 - 7289 (-)
Gene ID: MGYG000000716_46_7
Type: CAZyme
Location: 7484 - 8620 (+)
Type: CAZyme
Location: 7484 - 8620 (+)
Gene ID: MGYG000000716_46_8
Type: TC
Location: 8891 - 9703 (+)
Type: TC
Location: 8891 - 9703 (+)
Gene ID: MGYG000000716_46_9
Type: TC
Location: 9713 - 10468 (+)
Type: TC
Location: 9713 - 10468 (+)
Gene ID: MGYG000000716_46_10
Type: CAZyme
Location: 10470 - 11579 (+)
Type: CAZyme
Location: 10470 - 11579 (+)
Gene ID: MGYG000000716_46_11
Type: CAZyme
Location: 11588 - 12646 (+)
Type: CAZyme
Location: 11588 - 12646 (+)
Gene ID: MGYG000000716_46_12
Type: CAZyme
Location: 12668 - 13903 (+)
Type: CAZyme
Location: 12668 - 13903 (+)
Gene ID: MGYG000000716_46_13
Type: CAZyme
Location: 14019 - 14981 (-)
Type: CAZyme
Location: 14019 - 14981 (-)
Gene ID: MGYG000000716_46_14
Type: TC
Location: 15104 - 15772 (+)
Type: TC
Location: 15104 - 15772 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902465265
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000000716_46_7 | vegetarian > vegan | 2.14628 | 0.03311 |
| MGYG000000716_46_8 | vegetarian > vegan | 2.69900 | 0.01383 |
| MGYG000000716_46_9 | vegetarian > vegan | 1.21223 | 0.01383 |
| MGYG000000716_46_12 | vegetarian > vegan | 2.49092 | 0.02578 |