Cluster: MGYG000000660_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000000660
- CGC Family ID: CGCFAM_00008
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000000660_19 | MGYG000000660_19_6 | 5414 | 6181 | - | 3.A.1.103.1 |
| TC | MGYG000000660_19 | MGYG000000660_19_7 | 6194 | 7039 | - | 3.A.1.103.6 |
| CAZyme | MGYG000000660_19 | MGYG000000660_19_8 | 7201 | 8130 | + | GT81 |
| CAZyme | MGYG000000660_19 | MGYG000000660_19_9 | 8162 | 10006 | - | GT2 |
| CAZyme | MGYG000000660_19 | MGYG000000660_19_10 | 10176 | 12047 | + | GT2 |
Gene ID: MGYG000000660_19_6
Type: TC
Location: 5414 - 6181 (-)
Type: TC
Location: 5414 - 6181 (-)
Gene ID: MGYG000000660_19_7
Type: TC
Location: 6194 - 7039 (-)
Type: TC
Location: 6194 - 7039 (-)
Gene ID: MGYG000000660_19_8
Type: CAZyme
Location: 7201 - 8130 (+)
Type: CAZyme
Location: 7201 - 8130 (+)
Gene ID: MGYG000000660_19_9
Type: CAZyme
Location: 8162 - 10006 (-)
Type: CAZyme
Location: 8162 - 10006 (-)
Gene ID: MGYG000000660_19_10
Type: CAZyme
Location: 10176 - 12047 (+)
Type: CAZyme
Location: 10176 - 12047 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902464645
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000000660_19_7 | vegan > omnivore | 1.81197 | 0.00701 |
| MGYG000000660_19_8 | vegan > omnivore | 1.71349 | 0.00701 |
| MGYG000000660_19_9 | vegan > omnivore | 16.97038 | 0.00701 |
| MGYG000000660_19_9 | vegetarian > omnivore | 13.01543 | 0.03247 |