Cluster: MGYG000000649_CGC9
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000000649
- CGC Family ID: CGCFAM_00182
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000000649_12 | MGYG000000649_12_40 | 47666 | 48883 | - | GT4 |
| pfam | MGYG000000649_12 | MGYG000000649_12_41 | 48898 | 49662 | - | BcrAD_BadFG |
| pfam | MGYG000000649_12 | MGYG000000649_12_42 | 49818 | 50981 | - | HGD-D |
| TC | MGYG000000649_12 | MGYG000000649_12_43 | 51058 | 51843 | - | 3.A.1.5.36 |
| TC | MGYG000000649_12 | MGYG000000649_12_44 | 51833 | 52828 | - | 3.A.1.5.37 |
| TC | MGYG000000649_12 | MGYG000000649_12_45 | 52832 | 53662 | - | 3.A.1.5.39 |
| TC | MGYG000000649_12 | MGYG000000649_12_46 | 53659 | 54612 | - | 3.A.1.5.39 |
Gene ID: MGYG000000649_12_40
Type: CAZyme
Location: 47666 - 48883 (-)
Type: CAZyme
Location: 47666 - 48883 (-)
Gene ID: MGYG000000649_12_41
Type: pfam
Location: 48898 - 49662 (-)
Type: pfam
Location: 48898 - 49662 (-)
Gene ID: MGYG000000649_12_42
Type: pfam
Location: 49818 - 50981 (-)
Type: pfam
Location: 49818 - 50981 (-)
Gene ID: MGYG000000649_12_43
Type: TC
Location: 51058 - 51843 (-)
Type: TC
Location: 51058 - 51843 (-)
Gene ID: MGYG000000649_12_44
Type: TC
Location: 51833 - 52828 (-)
Type: TC
Location: 51833 - 52828 (-)
Gene ID: MGYG000000649_12_45
Type: TC
Location: 52832 - 53662 (-)
Type: TC
Location: 52832 - 53662 (-)
Gene ID: MGYG000000649_12_46
Type: TC
Location: 53659 - 54612 (-)
Type: TC
Location: 53659 - 54612 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902464565
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000000649_12_40 | vegan > omnivore | 1.57590 | 0.00701 |
| MGYG000000649_12_43 | vegan > omnivore | 2.93591 | 0.00701 |
| MGYG000000649_12_43 | vegetarian > omnivore | 1.10428 | 0.04425 |
| MGYG000000649_12_45 | vegan > omnivore | 3.04574 | 0.00701 |
| MGYG000000649_12_45 | vegetarian > omnivore | 1.29990 | 0.04425 |
| MGYG000000649_12_46 | vegan > omnivore | 2.78004 | 0.00701 |
| MGYG000000649_12_46 | vegetarian > omnivore | 1.15951 | 0.04425 |