Cluster: MGYG000000645_CGC5
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000000645
- CGC Family ID: CGCFAM_00230
- Continent: Africa
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000000645_5 | MGYG000000645_5_31 | 30216 | 31541 | + | GH4 |
| TC | MGYG000000645_5 | MGYG000000645_5_32 | 31624 | 33186 | + | 4.A.1.1.3 |
| TF | MGYG000000645_5 | MGYG000000645_5_33 | 33379 | 34179 | - | HTH_6 |
| TC | MGYG000000645_5 | MGYG000000645_5_34 | 34257 | 35048 | - | 4.A.1.1.1 |
| TC | MGYG000000645_5 | MGYG000000645_5_35 | 35094 | 35837 | - | 4.A.1.1.3 |
| CAZyme | MGYG000000645_5 | MGYG000000645_5_36 | 35862 | 37187 | - | GH4 |
| TC | MGYG000000645_5 | MGYG000000645_5_37 | 37431 | 38660 | - | 2.A.1.2.25 |
| NULL(UNKNOWN) | MGYG000000645_5 | MGYG000000645_5_38 | 38922 | 39788 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | MGYG000000645_5 | MGYG000000645_5_39 | 39902 | 40795 | + | Aldose_epim |
| TC | MGYG000000645_5 | MGYG000000645_5_40 | 40977 | 41903 | + | 3.A.1.3.20 |
| TC | MGYG000000645_5 | MGYG000000645_5_41 | 41913 | 43061 | + | 3.A.1.3.20 |
| TC | MGYG000000645_5 | MGYG000000645_5_42 | 43084 | 43869 | + | 3.A.1.3.20 |
Gene ID: MGYG000000645_5_31
Type: CAZyme
Location: 30216 - 31541 (+)
Type: CAZyme
Location: 30216 - 31541 (+)
Gene ID: MGYG000000645_5_32
Type: TC
Location: 31624 - 33186 (+)
Type: TC
Location: 31624 - 33186 (+)
Gene ID: MGYG000000645_5_33
Type: TF
Location: 33379 - 34179 (-)
Type: TF
Location: 33379 - 34179 (-)
Gene ID: MGYG000000645_5_34
Type: TC
Location: 34257 - 35048 (-)
Type: TC
Location: 34257 - 35048 (-)
Gene ID: MGYG000000645_5_35
Type: TC
Location: 35094 - 35837 (-)
Type: TC
Location: 35094 - 35837 (-)
Gene ID: MGYG000000645_5_36
Type: CAZyme
Location: 35862 - 37187 (-)
Type: CAZyme
Location: 35862 - 37187 (-)
Gene ID: MGYG000000645_5_37
Type: TC
Location: 37431 - 38660 (-)
Type: TC
Location: 37431 - 38660 (-)
Gene ID: MGYG000000645_5_38
Type:
Location: 38922 - 39788 (+)
Type:
Location: 38922 - 39788 (+)
Gene ID: MGYG000000645_5_39
Type: pfam
Location: 39902 - 40795 (+)
Type: pfam
Location: 39902 - 40795 (+)
Gene ID: MGYG000000645_5_40
Type: TC
Location: 40977 - 41903 (+)
Type: TC
Location: 40977 - 41903 (+)
Gene ID: MGYG000000645_5_41
Type: TC
Location: 41913 - 43061 (+)
Type: TC
Location: 41913 - 43061 (+)
Gene ID: MGYG000000645_5_42
Type: TC
Location: 43084 - 43869 (+)
Type: TC
Location: 43084 - 43869 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902464485
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.