Cluster: MGYG000000635_CGC4
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000000635
- CGC Family ID: CGCFAM_01622
- Continent: Africa
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000000635_30 | MGYG000000635_30_1 | 178 | 1443 | + | GT4 |
| STP | MGYG000000635_30 | MGYG000000635_30_2 | 1585 | 2814 | + | Aminotran_1_2 |
| TC | MGYG000000635_30 | MGYG000000635_30_3 | 2815 | 3480 | + | 9.B.18.1.2 |
| TC | MGYG000000635_30 | MGYG000000635_30_4 | 3631 | 4308 | - | 3.A.1.24.5 |
| TC | MGYG000000635_30 | MGYG000000635_30_5 | 4312 | 5061 | - | 3.A.1.24.2 |
| TC | MGYG000000635_30 | MGYG000000635_30_6 | 5091 | 5951 | - | 3.A.1.24.5 |
| pfam | MGYG000000635_30 | MGYG000000635_30_7 | 6257 | 7600 | + | Gln-synt_C | Gln-synt_N |
| TF | MGYG000000635_30 | MGYG000000635_30_8 | 7634 | 8311 | + | Trans_reg_C |
| TC | MGYG000000635_30 | MGYG000000635_30_9 | 8334 | 9881 | - | 1.I.1.1.3 |
| CAZyme | MGYG000000635_30 | MGYG000000635_30_10 | 9927 | 11297 | - | GT28 |
| pfam | MGYG000000635_30 | MGYG000000635_30_11 | 11322 | 11822 | - | GtrA_DPMS_TM |
| CAZyme | MGYG000000635_30 | MGYG000000635_30_12 | 11994 | 12980 | + | GT2 |
| TC | MGYG000000635_30 | MGYG000000635_30_13 | 13224 | 16772 | + | 3.A.1.106.7 |
Gene ID: MGYG000000635_30_1
Type: CAZyme
Location: 178 - 1443 (+)
Type: CAZyme
Location: 178 - 1443 (+)
Gene ID: MGYG000000635_30_2
Type: STP
Location: 1585 - 2814 (+)
Type: STP
Location: 1585 - 2814 (+)
Gene ID: MGYG000000635_30_3
Type: TC
Location: 2815 - 3480 (+)
Type: TC
Location: 2815 - 3480 (+)
Gene ID: MGYG000000635_30_4
Type: TC
Location: 3631 - 4308 (-)
Type: TC
Location: 3631 - 4308 (-)
Gene ID: MGYG000000635_30_5
Type: TC
Location: 4312 - 5061 (-)
Type: TC
Location: 4312 - 5061 (-)
Gene ID: MGYG000000635_30_6
Type: TC
Location: 5091 - 5951 (-)
Type: TC
Location: 5091 - 5951 (-)
Gene ID: MGYG000000635_30_7
Type: pfam
Location: 6257 - 7600 (+)
Type: pfam
Location: 6257 - 7600 (+)
Gene ID: MGYG000000635_30_8
Type: TF
Location: 7634 - 8311 (+)
Type: TF
Location: 7634 - 8311 (+)
Gene ID: MGYG000000635_30_9
Type: TC
Location: 8334 - 9881 (-)
Type: TC
Location: 8334 - 9881 (-)
Gene ID: MGYG000000635_30_10
Type: CAZyme
Location: 9927 - 11297 (-)
Type: CAZyme
Location: 9927 - 11297 (-)
Gene ID: MGYG000000635_30_11
Type: pfam
Location: 11322 - 11822 (-)
Type: pfam
Location: 11322 - 11822 (-)
Gene ID: MGYG000000635_30_12
Type: CAZyme
Location: 11994 - 12980 (+)
Type: CAZyme
Location: 11994 - 12980 (+)
Gene ID: MGYG000000635_30_13
Type: TC
Location: 13224 - 16772 (+)
Type: TC
Location: 13224 - 16772 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Eggerthellaceae
Genus
Ellagibacter
Species
Ellagibacter sp934663775
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000000635_30_1 | vegetarian > omnivore | 1.29089 | 0.00123 |
| MGYG000000635_30_2 | vegetarian > omnivore | 1.11780 | 0.00123 |
| MGYG000000635_30_3 | vegan > omnivore | 1.65338 | 0.03052 |
| MGYG000000635_30_3 | vegetarian > omnivore | 1.76376 | 0.00123 |
| MGYG000000635_30_10 | vegetarian > omnivore | 1.21171 | 0.00123 |
| MGYG000000635_30_10 | vegetarian > vegan | 1.16199 | 0.01301 |
| MGYG000000635_30_13 | vegetarian > vegan | 1.11716 | 0.01301 |