Cluster: MGYG000000598_CGC10
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000000598
- Continent: Africa
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000000598_9 | MGYG000000598_9_9 | 13638 | 15014 | - | GH13_20 |
| TC | MGYG000000598_9 | MGYG000000598_9_10 | 15168 | 16364 | - | 2.A.1.2.18 |
| TC | MGYG000000598_9 | MGYG000000598_9_11 | 16488 | 18848 | - | 9.A.8.1.6 |
| NULL(UNKNOWN) | MGYG000000598_9 | MGYG000000598_9_12 | 18970 | 19290 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | MGYG000000598_9 | MGYG000000598_9_13 | 19338 | 20237 | - | S09.UPW |
| TC | MGYG000000598_9 | MGYG000000598_9_14 | 20482 | 21045 | + | 4.A.1.2.6 |
| pfam | MGYG000000598_9 | MGYG000000598_9_15 | 21227 | 22630 | + | tRNA-synt_2 | tRNA_anti-codon |
| NULL(UNKNOWN) | MGYG000000598_9 | MGYG000000598_9_16 | 22880 | 23665 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000000598_9 | MGYG000000598_9_17 | 23826 | 24806 | + | 3.A.1.34.1 |
| TC | MGYG000000598_9 | MGYG000000598_9_18 | 25011 | 25934 | + | 3.A.1.34.1 |
| TC | MGYG000000598_9 | MGYG000000598_9_19 | 25927 | 26721 | + | 3.A.1.34.1 |
| pfam | MGYG000000598_9 | MGYG000000598_9_20 | 26879 | 28906 | + | Metallophos | 5_nucleotid_C |
| TC | MGYG000000598_9 | MGYG000000598_9_21 | 29035 | 29802 | + | 1.A.23.4.10 |
| pfam | MGYG000000598_9 | MGYG000000598_9_22 | 29896 | 31812 | + | Bmp |
| pfam | MGYG000000598_9 | MGYG000000598_9_23 | 31809 | 32519 | + | Metallophos | Metallophos_2 |
| TC | MGYG000000598_9 | MGYG000000598_9_24 | 32643 | 33350 | - | 1.C.82.1.1 |
Gene ID: MGYG000000598_9_9
Type: CAZyme
Location: 13638 - 15014 (-)
Type: CAZyme
Location: 13638 - 15014 (-)
Gene ID: MGYG000000598_9_10
Type: TC
Location: 15168 - 16364 (-)
Type: TC
Location: 15168 - 16364 (-)
Gene ID: MGYG000000598_9_11
Type: TC
Location: 16488 - 18848 (-)
Type: TC
Location: 16488 - 18848 (-)
Gene ID: MGYG000000598_9_12
Type:
Location: 18970 - 19290 (-)
Type:
Location: 18970 - 19290 (-)
Gene ID: MGYG000000598_9_13
Type: peptidase
Location: 19338 - 20237 (-)
Type: peptidase
Location: 19338 - 20237 (-)
Gene ID: MGYG000000598_9_14
Type: TC
Location: 20482 - 21045 (+)
Type: TC
Location: 20482 - 21045 (+)
Gene ID: MGYG000000598_9_15
Type: pfam
Location: 21227 - 22630 (+)
Type: pfam
Location: 21227 - 22630 (+)
Gene ID: MGYG000000598_9_16
Type:
Location: 22880 - 23665 (+)
Type:
Location: 22880 - 23665 (+)
Gene ID: MGYG000000598_9_17
Type: TC
Location: 23826 - 24806 (+)
Type: TC
Location: 23826 - 24806 (+)
Gene ID: MGYG000000598_9_18
Type: TC
Location: 25011 - 25934 (+)
Type: TC
Location: 25011 - 25934 (+)
Gene ID: MGYG000000598_9_19
Type: TC
Location: 25927 - 26721 (+)
Type: TC
Location: 25927 - 26721 (+)
Gene ID: MGYG000000598_9_20
Type: pfam
Location: 26879 - 28906 (+)
Type: pfam
Location: 26879 - 28906 (+)
Gene ID: MGYG000000598_9_21
Type: TC
Location: 29035 - 29802 (+)
Type: TC
Location: 29035 - 29802 (+)
Gene ID: MGYG000000598_9_22
Type: pfam
Location: 29896 - 31812 (+)
Type: pfam
Location: 29896 - 31812 (+)
Gene ID: MGYG000000598_9_23
Type: pfam
Location: 31809 - 32519 (+)
Type: pfam
Location: 31809 - 32519 (+)
Gene ID: MGYG000000598_9_24
Type: TC
Location: 32643 - 33350 (-)
Type: TC
Location: 32643 - 33350 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp937937635
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000000598_9_20 | vegan > omnivore | 1.91610 | 0.01165 |
| MGYG000000598_9_20 | vegetarian > omnivore | 1.39076 | 0.01057 |