Cluster: MGYG000000594_CGC8
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000000594
- CGC Family ID: CGCFAM_00024
- Continent: Africa
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000000594_24 | MGYG000000594_24_11 | 10307 | 11101 | - | 3.A.1.34.1 |
| TC | MGYG000000594_24 | MGYG000000594_24_12 | 11094 | 12017 | - | 3.A.1.34.1 |
| TC | MGYG000000594_24 | MGYG000000594_24_13 | 12222 | 13202 | - | 3.A.1.34.1 |
| NULL(UNKNOWN) | MGYG000000594_24 | MGYG000000594_24_14 | 13363 | 14148 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | MGYG000000594_24 | MGYG000000594_24_15 | 14398 | 15801 | - | tRNA-synt_2 | tRNA_anti-codon |
| TC | MGYG000000594_24 | MGYG000000594_24_16 | 15983 | 16546 | - | 4.A.1.2.6 |
| peptidase | MGYG000000594_24 | MGYG000000594_24_17 | 16792 | 17691 | + | S09.UPW |
| NULL(UNKNOWN) | MGYG000000594_24 | MGYG000000594_24_18 | 17739 | 18059 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000000594_24 | MGYG000000594_24_19 | 18181 | 19926 | + | 9.A.8.1.6 |
| TC | MGYG000000594_24 | MGYG000000594_24_20 | 19908 | 20540 | + | 9.A.8.1.9 |
| TC | MGYG000000594_24 | MGYG000000594_24_21 | 20661 | 21857 | + | 2.A.1.2.18 |
| CAZyme | MGYG000000594_24 | MGYG000000594_24_22 | 22011 | 23387 | + | GH13_20 |
Gene ID: MGYG000000594_24_11
Type: TC
Location: 10307 - 11101 (-)
Type: TC
Location: 10307 - 11101 (-)
Gene ID: MGYG000000594_24_12
Type: TC
Location: 11094 - 12017 (-)
Type: TC
Location: 11094 - 12017 (-)
Gene ID: MGYG000000594_24_13
Type: TC
Location: 12222 - 13202 (-)
Type: TC
Location: 12222 - 13202 (-)
Gene ID: MGYG000000594_24_14
Type:
Location: 13363 - 14148 (-)
Type:
Location: 13363 - 14148 (-)
Gene ID: MGYG000000594_24_15
Type: pfam
Location: 14398 - 15801 (-)
Type: pfam
Location: 14398 - 15801 (-)
Gene ID: MGYG000000594_24_16
Type: TC
Location: 15983 - 16546 (-)
Type: TC
Location: 15983 - 16546 (-)
Gene ID: MGYG000000594_24_17
Type: peptidase
Location: 16792 - 17691 (+)
Type: peptidase
Location: 16792 - 17691 (+)
Gene ID: MGYG000000594_24_18
Type:
Location: 17739 - 18059 (+)
Type:
Location: 17739 - 18059 (+)
Gene ID: MGYG000000594_24_19
Type: TC
Location: 18181 - 19926 (+)
Type: TC
Location: 18181 - 19926 (+)
Gene ID: MGYG000000594_24_20
Type: TC
Location: 19908 - 20540 (+)
Type: TC
Location: 19908 - 20540 (+)
Gene ID: MGYG000000594_24_21
Type: TC
Location: 20661 - 21857 (+)
Type: TC
Location: 20661 - 21857 (+)
Gene ID: MGYG000000594_24_22
Type: CAZyme
Location: 22011 - 23387 (+)
Type: CAZyme
Location: 22011 - 23387 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902464035
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.