Cluster: MGYG000000579_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000000579
- Continent: Africa
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000000579_6 | MGYG000000579_6_85 | 102311 | 103636 | + | GH4 |
| TC | MGYG000000579_6 | MGYG000000579_6_86 | 103719 | 105281 | + | 4.A.1.1.3 |
| TF | MGYG000000579_6 | MGYG000000579_6_87 | 105474 | 106274 | - | HTH_6 |
| TC | MGYG000000579_6 | MGYG000000579_6_88 | 106352 | 107932 | - | 4.A.1.1.14 |
| CAZyme | MGYG000000579_6 | MGYG000000579_6_89 | 107957 | 109282 | - | GH4 |
| TC | MGYG000000579_6 | MGYG000000579_6_90 | 109526 | 110755 | - | 2.A.1.2.25 |
Gene ID: MGYG000000579_6_85
Type: CAZyme
Location: 102311 - 103636 (+)
Type: CAZyme
Location: 102311 - 103636 (+)
Gene ID: MGYG000000579_6_86
Type: TC
Location: 103719 - 105281 (+)
Type: TC
Location: 103719 - 105281 (+)
Gene ID: MGYG000000579_6_87
Type: TF
Location: 105474 - 106274 (-)
Type: TF
Location: 105474 - 106274 (-)
Gene ID: MGYG000000579_6_88
Type: TC
Location: 106352 - 107932 (-)
Type: TC
Location: 106352 - 107932 (-)
Gene ID: MGYG000000579_6_89
Type: CAZyme
Location: 107957 - 109282 (-)
Type: CAZyme
Location: 107957 - 109282 (-)
Gene ID: MGYG000000579_6_90
Type: TC
Location: 109526 - 110755 (-)
Type: TC
Location: 109526 - 110755 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp937995345
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.