Cluster: MGYG000000579_CGC7
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate:
- Genome ID: MGYG000000579
- CGC Family ID: CGCFAM_01372
- Continent: Africa
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000000579_5 | MGYG000000579_5_111 | 125561 | 126370 | + | 9.B.18.1.2 |
| TC | MGYG000000579_5 | MGYG000000579_5_112 | 126363 | 127007 | + | 9.B.18.1.2 |
| pfam | MGYG000000579_5 | MGYG000000579_5_113 | 127011 | 128720 | + | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| pfam | MGYG000000579_5 | MGYG000000579_5_114 | 128717 | 130066 | + | NTP_transferase | MannoseP_isomer |
| CAZyme | MGYG000000579_5 | MGYG000000579_5_115 | 130068 | 131165 | + | GT4 |
| CAZyme | MGYG000000579_5 | MGYG000000579_5_116 | 131162 | 132253 | + | GT4 |
| pfam | MGYG000000579_5 | MGYG000000579_5_117 | 132250 | 133359 | + | PS_pyruv_trans |
| STP | MGYG000000579_5 | MGYG000000579_5_118 | 133359 | 134546 | + | Fer4 | Fer4 |
| CAZyme | MGYG000000579_5 | MGYG000000579_5_119 | 134569 | 135699 | + | GT4 |
| CAZyme | MGYG000000579_5 | MGYG000000579_5_120 | 135696 | 136817 | + | GT4 |
Gene ID: MGYG000000579_5_111
Type: TC
Location: 125561 - 126370 (+)
Type: TC
Location: 125561 - 126370 (+)
Gene ID: MGYG000000579_5_112
Type: TC
Location: 126363 - 127007 (+)
Type: TC
Location: 126363 - 127007 (+)
Gene ID: MGYG000000579_5_113
Type: pfam
Location: 127011 - 128720 (+)
Type: pfam
Location: 127011 - 128720 (+)
Gene ID: MGYG000000579_5_114
Type: pfam
Location: 128717 - 130066 (+)
Type: pfam
Location: 128717 - 130066 (+)
Gene ID: MGYG000000579_5_115
Type: CAZyme
Location: 130068 - 131165 (+)
Type: CAZyme
Location: 130068 - 131165 (+)
Gene ID: MGYG000000579_5_116
Type: CAZyme
Location: 131162 - 132253 (+)
Type: CAZyme
Location: 131162 - 132253 (+)
Gene ID: MGYG000000579_5_117
Type: pfam
Location: 132250 - 133359 (+)
Type: pfam
Location: 132250 - 133359 (+)
Gene ID: MGYG000000579_5_118
Type: STP
Location: 133359 - 134546 (+)
Type: STP
Location: 133359 - 134546 (+)
Gene ID: MGYG000000579_5_119
Type: CAZyme
Location: 134569 - 135699 (+)
Type: CAZyme
Location: 134569 - 135699 (+)
Gene ID: MGYG000000579_5_120
Type: CAZyme
Location: 135696 - 136817 (+)
Type: CAZyme
Location: 135696 - 136817 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp937995345
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.