Cluster: MGYG000000579_CGC15
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000000579
- CGC Family ID: CGCFAM_00018
- Continent: Africa
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000000579_16 | MGYG000000579_16_29 | 40352 | 41404 | + | 9.B.18.2.1 |
| pfam | MGYG000000579_16 | MGYG000000579_16_30 | 41406 | 42623 | + | Epimerase | Polysacc_synt_C |
| CAZyme | MGYG000000579_16 | MGYG000000579_16_31 | 42628 | 43749 | + | GT4 |
| pfam | MGYG000000579_16 | MGYG000000579_16_32 | 43746 | 43997 | + | Glycos_transf_1 | Glyco_trans_1_4 |
| CAZyme | MGYG000000579_16 | MGYG000000579_16_33 | 44082 | 45305 | + | GT4 |
Gene ID: MGYG000000579_16_29
Type: TC
Location: 40352 - 41404 (+)
Type: TC
Location: 40352 - 41404 (+)
Gene ID: MGYG000000579_16_30
Type: pfam
Location: 41406 - 42623 (+)
Type: pfam
Location: 41406 - 42623 (+)
Gene ID: MGYG000000579_16_31
Type: CAZyme
Location: 42628 - 43749 (+)
Type: CAZyme
Location: 42628 - 43749 (+)
Gene ID: MGYG000000579_16_32
Type: pfam
Location: 43746 - 43997 (+)
Type: pfam
Location: 43746 - 43997 (+)
Gene ID: MGYG000000579_16_33
Type: CAZyme
Location: 44082 - 45305 (+)
Type: CAZyme
Location: 44082 - 45305 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp937995345
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000000579_16_30 | vegetarian > omnivore | 1.58147 | 0.03728 |
| MGYG000000579_16_30 | vegetarian > vegan | 1.81984 | 0.01287 |