Cluster: MGYG000000565_CGC10
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000000565
- CGC Family ID: CGCFAM_00024
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000000565_29 | MGYG000000565_29_3 | 882 | 1589 | + | 1.C.82.1.1 |
| pfam | MGYG000000565_29 | MGYG000000565_29_4 | 1715 | 2425 | - | Metallophos | Metallophos_2 |
| pfam | MGYG000000565_29 | MGYG000000565_29_5 | 2422 | 4338 | - | Bmp |
| TC | MGYG000000565_29 | MGYG000000565_29_6 | 4431 | 5198 | - | 1.A.23.4.2 |
| TC | MGYG000000565_29 | MGYG000000565_29_7 | 5392 | 6186 | - | 3.A.1.34.1 |
| TC | MGYG000000565_29 | MGYG000000565_29_8 | 6179 | 7102 | - | 3.A.1.34.1 |
| TC | MGYG000000565_29 | MGYG000000565_29_9 | 7307 | 8287 | - | 3.A.1.34.1 |
| pfam | MGYG000000565_29 | MGYG000000565_29_10 | 8447 | 9235 | - | WYL |
| pfam | MGYG000000565_29 | MGYG000000565_29_11 | 9493 | 10896 | - | tRNA-synt_2 | tRNA_anti-codon |
| TC | MGYG000000565_29 | MGYG000000565_29_12 | 11078 | 11641 | - | 4.A.1.2.6 |
| peptidase | MGYG000000565_29 | MGYG000000565_29_13 | 11888 | 12787 | + | S09.UPW |
| NULL(UNKNOWN) | MGYG000000565_29 | MGYG000000565_29_14 | 12835 | 13155 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000000565_29 | MGYG000000565_29_15 | 13277 | 15637 | + | 9.A.8.1.6 |
| TC | MGYG000000565_29 | MGYG000000565_29_16 | 15762 | 16958 | + | 2.A.1.2.18 |
| CAZyme | MGYG000000565_29 | MGYG000000565_29_17 | 17112 | 18488 | + | GH13_20 |
Gene ID: MGYG000000565_29_3
Type: TC
Location: 882 - 1589 (+)
Type: TC
Location: 882 - 1589 (+)
Gene ID: MGYG000000565_29_4
Type: pfam
Location: 1715 - 2425 (-)
Type: pfam
Location: 1715 - 2425 (-)
Gene ID: MGYG000000565_29_5
Type: pfam
Location: 2422 - 4338 (-)
Type: pfam
Location: 2422 - 4338 (-)
Gene ID: MGYG000000565_29_6
Type: TC
Location: 4431 - 5198 (-)
Type: TC
Location: 4431 - 5198 (-)
Gene ID: MGYG000000565_29_7
Type: TC
Location: 5392 - 6186 (-)
Type: TC
Location: 5392 - 6186 (-)
Gene ID: MGYG000000565_29_8
Type: TC
Location: 6179 - 7102 (-)
Type: TC
Location: 6179 - 7102 (-)
Gene ID: MGYG000000565_29_9
Type: TC
Location: 7307 - 8287 (-)
Type: TC
Location: 7307 - 8287 (-)
Gene ID: MGYG000000565_29_10
Type: pfam
Location: 8447 - 9235 (-)
Type: pfam
Location: 8447 - 9235 (-)
Gene ID: MGYG000000565_29_11
Type: pfam
Location: 9493 - 10896 (-)
Type: pfam
Location: 9493 - 10896 (-)
Gene ID: MGYG000000565_29_12
Type: TC
Location: 11078 - 11641 (-)
Type: TC
Location: 11078 - 11641 (-)
Gene ID: MGYG000000565_29_13
Type: peptidase
Location: 11888 - 12787 (+)
Type: peptidase
Location: 11888 - 12787 (+)
Gene ID: MGYG000000565_29_14
Type:
Location: 12835 - 13155 (+)
Type:
Location: 12835 - 13155 (+)
Gene ID: MGYG000000565_29_15
Type: TC
Location: 13277 - 15637 (+)
Type: TC
Location: 13277 - 15637 (+)
Gene ID: MGYG000000565_29_16
Type: TC
Location: 15762 - 16958 (+)
Type: TC
Location: 15762 - 16958 (+)
Gene ID: MGYG000000565_29_17
Type: CAZyme
Location: 17112 - 18488 (+)
Type: CAZyme
Location: 17112 - 18488 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900545555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.