Cluster: MGYG000000563_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000000563
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000000563_17 | MGYG000000563_17_2 | 1216 | 2703 | - | GH1 |
| TC | MGYG000000563_17 | MGYG000000563_17_3 | 2789 | 3130 | - | 4.A.3.2.1 |
| TC | MGYG000000563_17 | MGYG000000563_17_4 | 3133 | 3429 | - | 4.A.3.2.6 |
| TC | MGYG000000563_17 | MGYG000000563_17_5 | 3478 | 4770 | - | 4.A.3.2.2 |
| pfam | MGYG000000563_17 | MGYG000000563_17_6 | 4925 | 5692 | - | YdjC |
| TF | MGYG000000563_17 | MGYG000000563_17_7 | 5981 | 6802 | + | HTH_6 |
| CAZyme | MGYG000000563_17 | MGYG000000563_17_8 | 6823 | 8211 | - | GH1 |
Gene ID: MGYG000000563_17_2
Type: CAZyme
Location: 1216 - 2703 (-)
Type: CAZyme
Location: 1216 - 2703 (-)
Gene ID: MGYG000000563_17_3
Type: TC
Location: 2789 - 3130 (-)
Type: TC
Location: 2789 - 3130 (-)
Gene ID: MGYG000000563_17_4
Type: TC
Location: 3133 - 3429 (-)
Type: TC
Location: 3133 - 3429 (-)
Gene ID: MGYG000000563_17_5
Type: TC
Location: 3478 - 4770 (-)
Type: TC
Location: 3478 - 4770 (-)
Gene ID: MGYG000000563_17_6
Type: pfam
Location: 4925 - 5692 (-)
Type: pfam
Location: 4925 - 5692 (-)
Gene ID: MGYG000000563_17_7
Type: TF
Location: 5981 - 6802 (+)
Type: TF
Location: 5981 - 6802 (+)
Gene ID: MGYG000000563_17_8
Type: CAZyme
Location: 6823 - 8211 (-)
Type: CAZyme
Location: 6823 - 8211 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900546105
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.