Cluster: MGYG000000563_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000000563
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000000563_2 | MGYG000000563_2_17 | 22740 | 24167 | + | 4.A.1.2.11 |
| CAZyme | MGYG000000563_2 | MGYG000000563_2_18 | 24376 | 25689 | + | GH140 |
| TF | MGYG000000563_2 | MGYG000000563_2_19 | 25840 | 26694 | - | HTH_6 |
| CAZyme | MGYG000000563_2 | MGYG000000563_2_20 | 26859 | 29450 | - | GH106 |
| TF | MGYG000000563_2 | MGYG000000563_2_21 | 29565 | 30557 | + | 0035607 |
| CAZyme | MGYG000000563_2 | MGYG000000563_2_22 | 30725 | 32173 | + | GH1 |
| TC | MGYG000000563_2 | MGYG000000563_2_23 | 32314 | 32850 | + | 4.A.1.2.6 |
Gene ID: MGYG000000563_2_17
Type: TC
Location: 22740 - 24167 (+)
Type: TC
Location: 22740 - 24167 (+)
Gene ID: MGYG000000563_2_18
Type: CAZyme
Location: 24376 - 25689 (+)
Type: CAZyme
Location: 24376 - 25689 (+)
Gene ID: MGYG000000563_2_19
Type: TF
Location: 25840 - 26694 (-)
Type: TF
Location: 25840 - 26694 (-)
Gene ID: MGYG000000563_2_20
Type: CAZyme
Location: 26859 - 29450 (-)
Type: CAZyme
Location: 26859 - 29450 (-)
Gene ID: MGYG000000563_2_21
Type: TF
Location: 29565 - 30557 (+)
Type: TF
Location: 29565 - 30557 (+)
Gene ID: MGYG000000563_2_22
Type: CAZyme
Location: 30725 - 32173 (+)
Type: CAZyme
Location: 30725 - 32173 (+)
Gene ID: MGYG000000563_2_23
Type: TC
Location: 32314 - 32850 (+)
Type: TC
Location: 32314 - 32850 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900546105
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.