Cluster: MGYG000000563_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000000563
- CGC Family ID: CGCFAM_00154
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000000563_2 | MGYG000000563_2_7 | 6691 | 8061 | + | 4.A.1.2.6 |
| peptidase | MGYG000000563_2 | MGYG000000563_2_8 | 8167 | 9147 | + | S09.UPC |
| pfam | MGYG000000563_2 | MGYG000000563_2_9 | 9271 | 9915 | + | DUF4867 |
| CAZyme | MGYG000000563_2 | MGYG000000563_2_10 | 10180 | 11610 | + | GH1 |
| pfam | MGYG000000563_2 | MGYG000000563_2_11 | 11708 | 12985 | - | AAA_14 | DUF4143 |
| TC | MGYG000000563_2 | MGYG000000563_2_12 | 13357 | 16125 | - | 3.A.3.4.1 |
Gene ID: MGYG000000563_2_7
Type: TC
Location: 6691 - 8061 (+)
Type: TC
Location: 6691 - 8061 (+)
Gene ID: MGYG000000563_2_8
Type: peptidase
Location: 8167 - 9147 (+)
Type: peptidase
Location: 8167 - 9147 (+)
Gene ID: MGYG000000563_2_9
Type: pfam
Location: 9271 - 9915 (+)
Type: pfam
Location: 9271 - 9915 (+)
Gene ID: MGYG000000563_2_10
Type: CAZyme
Location: 10180 - 11610 (+)
Type: CAZyme
Location: 10180 - 11610 (+)
Gene ID: MGYG000000563_2_11
Type: pfam
Location: 11708 - 12985 (-)
Type: pfam
Location: 11708 - 12985 (-)
Gene ID: MGYG000000563_2_12
Type: TC
Location: 13357 - 16125 (-)
Type: TC
Location: 13357 - 16125 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900546105
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000000563_2_11 | vegetarian > vegan | 1.31355 | 0.00313 |