Cluster: MGYG000000440_CGC2
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate: alpha-glucan
- Genome ID: MGYG000000440
- CGC Family ID: CGCFAM_00004
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000000440_2 | MGYG000000440_2_290 | 279993 | 282236 | - | CBM67 | GH78 |
| CAZyme | MGYG000000440_2 | MGYG000000440_2_291 | 282662 | 284632 | + | CBM48 | GH13_9 |
| pfam | MGYG000000440_2 | MGYG000000440_2_292 | 284788 | 285972 | + | NTP_transferase | Hexapep_GlmU |
| pfam | MGYG000000440_2 | MGYG000000440_2_293 | 285987 | 287120 | + | NTP_transferase | Hexapep_GlmU |
| CAZyme | MGYG000000440_2 | MGYG000000440_2_294 | 287117 | 288757 | + | GT5 |
| CAZyme | MGYG000000440_2 | MGYG000000440_2_295 | 289373 | 291847 | + | GT35 |
| pfam | MGYG000000440_2 | MGYG000000440_2_296 | 292291 | 293145 | + | AP_endonuc_2 |
| TF | MGYG000000440_2 | MGYG000000440_2_297 | 293261 | 294160 | + | HTH_AraC |
| CAZyme | MGYG000000440_2 | MGYG000000440_2_298 | 294396 | 296609 | - | CBM67 | GH78 |
| STP | MGYG000000440_2 | MGYG000000440_2_299 | 296803 | 298203 | - | AAA |
| pfam | MGYG000000440_2 | MGYG000000440_2_300 | 298694 | 299428 | - | Amidase_3 |
| TC | MGYG000000440_2 | MGYG000000440_2_301 | 299660 | 301018 | + | 2.A.38.1.1 |
| TC | MGYG000000440_2 | MGYG000000440_2_302 | 301031 | 302485 | + | 2.A.38.1.1 |
Gene ID: MGYG000000440_2_290
Type: CAZyme
Location: 279993 - 282236 (-)
Type: CAZyme
Location: 279993 - 282236 (-)
Gene ID: MGYG000000440_2_291
Type: CAZyme
Location: 282662 - 284632 (+)
Type: CAZyme
Location: 282662 - 284632 (+)
Gene ID: MGYG000000440_2_292
Type: pfam
Location: 284788 - 285972 (+)
Type: pfam
Location: 284788 - 285972 (+)
Gene ID: MGYG000000440_2_293
Type: pfam
Location: 285987 - 287120 (+)
Type: pfam
Location: 285987 - 287120 (+)
Gene ID: MGYG000000440_2_294
Type: CAZyme
Location: 287117 - 288757 (+)
Type: CAZyme
Location: 287117 - 288757 (+)
Gene ID: MGYG000000440_2_295
Type: CAZyme
Location: 289373 - 291847 (+)
Type: CAZyme
Location: 289373 - 291847 (+)
Gene ID: MGYG000000440_2_296
Type: pfam
Location: 292291 - 293145 (+)
Type: pfam
Location: 292291 - 293145 (+)
Gene ID: MGYG000000440_2_297
Type: TF
Location: 293261 - 294160 (+)
Type: TF
Location: 293261 - 294160 (+)
Gene ID: MGYG000000440_2_298
Type: CAZyme
Location: 294396 - 296609 (-)
Type: CAZyme
Location: 294396 - 296609 (-)
Gene ID: MGYG000000440_2_299
Type: STP
Location: 296803 - 298203 (-)
Type: STP
Location: 296803 - 298203 (-)
Gene ID: MGYG000000440_2_300
Type: pfam
Location: 298694 - 299428 (-)
Type: pfam
Location: 298694 - 299428 (-)
Gene ID: MGYG000000440_2_301
Type: TC
Location: 299660 - 301018 (+)
Type: TC
Location: 299660 - 301018 (+)
Gene ID: MGYG000000440_2_302
Type: TC
Location: 301031 - 302485 (+)
Type: TC
Location: 301031 - 302485 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
UMGS1865
Species
UMGS1865 sp934500855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000000440_2_290 | vegan > omnivore | 1.19190 | 0.01124 |
| MGYG000000440_2_291 | vegan > omnivore | 1.44045 | 0.01124 |
| MGYG000000440_2_293 | vegan > omnivore | 1.27046 | 0.01124 |
| MGYG000000440_2_294 | vegan > omnivore | 1.06610 | 0.01124 |
| MGYG000000440_2_300 | vegan > omnivore | 1.11053 | 0.01124 |
| MGYG000000440_2_301 | vegan > omnivore | 2.01682 | 0.01124 |
| MGYG000000440_2_302 | vegan > omnivore | 1.45020 | 0.01124 |