Cluster: MGYG000000364_CGC31
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000000364
- CGC Family ID: CGCFAM_03006
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000000364_19 | MGYG000000364_19_1 | 1 | 1056 | + | 3.A.1.2.15 |
| CAZyme | MGYG000000364_19 | MGYG000000364_19_2 | 1142 | 2620 | + | GH32 |
| STP | MGYG000000364_19 | MGYG000000364_19_3 | 2642 | 3607 | + | PfkB |
| TC | MGYG000000364_19 | MGYG000000364_19_4 | 3933 | 5549 | + | 4.C.1.1.4 |
| pfam | MGYG000000364_19 | MGYG000000364_19_5 | 5635 | 5862 | + | PP-binding |
| TC | MGYG000000364_19 | MGYG000000364_19_6 | 5932 | 7521 | + | 2.A.50.2.1 |
Gene ID: MGYG000000364_19_1
Type: TC
Location: 1 - 1056 (+)
Type: TC
Location: 1 - 1056 (+)
Gene ID: MGYG000000364_19_2
Type: CAZyme
Location: 1142 - 2620 (+)
Type: CAZyme
Location: 1142 - 2620 (+)
Gene ID: MGYG000000364_19_3
Type: STP
Location: 2642 - 3607 (+)
Type: STP
Location: 2642 - 3607 (+)
Gene ID: MGYG000000364_19_4
Type: TC
Location: 3933 - 5549 (+)
Type: TC
Location: 3933 - 5549 (+)
Gene ID: MGYG000000364_19_5
Type: pfam
Location: 5635 - 5862 (+)
Type: pfam
Location: 5635 - 5862 (+)
Gene ID: MGYG000000364_19_6
Type: TC
Location: 5932 - 7521 (+)
Type: TC
Location: 5932 - 7521 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp900767685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000000364_19_1 | vegan > omnivore | 1.39198 | 0.01285 |
| MGYG000000364_19_1 | vegetarian > omnivore | 1.62673 | 0.01548 |
| MGYG000000364_19_3 | vegan > omnivore | 1.29029 | 0.01285 |
| MGYG000000364_19_3 | vegetarian > omnivore | 1.28889 | 0.01548 |