Cluster: MGYG000000319_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: MGYG000000319
- CGC Family ID: CGCFAM_00004
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000000319_16 | MGYG000000319_16_22 | 20336 | 22258 | + | 1.A.34.1.3 |
| CAZyme | MGYG000000319_16 | MGYG000000319_16_23 | 22335 | 23759 | - | GT5 |
| pfam | MGYG000000319_16 | MGYG000000319_16_24 | 23852 | 24973 | - | NTP_transferase | Hexapep_GlmU |
| pfam | MGYG000000319_16 | MGYG000000319_16_25 | 24975 | 26180 | - | NTP_transferase | Hexapep_GlmU |
| CAZyme | MGYG000000319_16 | MGYG000000319_16_26 | 26268 | 28133 | - | CBM48 | GH13_9 |
Gene ID: MGYG000000319_16_22
Type: TC
Location: 20336 - 22258 (+)
Type: TC
Location: 20336 - 22258 (+)
Gene ID: MGYG000000319_16_23
Type: CAZyme
Location: 22335 - 23759 (-)
Type: CAZyme
Location: 22335 - 23759 (-)
Gene ID: MGYG000000319_16_24
Type: pfam
Location: 23852 - 24973 (-)
Type: pfam
Location: 23852 - 24973 (-)
Gene ID: MGYG000000319_16_25
Type: pfam
Location: 24975 - 26180 (-)
Type: pfam
Location: 24975 - 26180 (-)
Gene ID: MGYG000000319_16_26
Type: CAZyme
Location: 26268 - 28133 (-)
Type: CAZyme
Location: 26268 - 28133 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Pygmaiobacter
Species
Pygmaiobacter massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.