Cluster: MGYG000000314_CGC14
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000000314
- CGC Family ID: CGCFAM_04553
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000000314_162 | MGYG000000314_162_1 | 1 | 519 | + | 3.A.1.5.27 |
| pfam | MGYG000000314_162 | MGYG000000314_162_2 | 596 | 1759 | + | HGD-D |
| pfam | MGYG000000314_162 | MGYG000000314_162_3 | 1914 | 2678 | + | BcrAD_BadFG |
| CAZyme | MGYG000000314_162 | MGYG000000314_162_4 | 2693 | 3910 | + | GT4 |
Gene ID: MGYG000000314_162_1
Type: TC
Location: 1 - 519 (+)
Type: TC
Location: 1 - 519 (+)
Gene ID: MGYG000000314_162_2
Type: pfam
Location: 596 - 1759 (+)
Type: pfam
Location: 596 - 1759 (+)
Gene ID: MGYG000000314_162_3
Type: pfam
Location: 1914 - 2678 (+)
Type: pfam
Location: 1914 - 2678 (+)
Gene ID: MGYG000000314_162_4
Type: CAZyme
Location: 2693 - 3910 (+)
Type: CAZyme
Location: 2693 - 3910 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900550355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000000314_162_1 | vegan > omnivore | 3.65359 | 0.00566 |
| MGYG000000314_162_1 | vegetarian > omnivore | 2.06294 | 0.02377 |
| MGYG000000314_162_4 | vegan > omnivore | 1.76338 | 0.00566 |