dbCAN HGM

Cluster: KY225_44_CGC9

Cluster Details
Gene Composition
Taxonomic Lineage
Gene level Read Mapping
Explore Read Mapping

🧬 Cluster Details

Gene Count: 31
CAZyme Count: 2
Substrate:
Genome ID: KY225_44
CGC Family ID: CGCFAM_05119
Continent: Africa
Source Study: Maghini et al., 2025 →

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	k141_138043	k141_138043_121	144678	145337	-	3.A.1.24.5
TC	k141_138043	k141_138043_122	145343	146404	-	3.A.1.24.1
TC	k141_138043	k141_138043_123	146540	147415	-	3.A.1.24.5
pfam	k141_138043	k141_138043_124	147455	148477	-	ApbA \| ApbA_C
TC	k141_138043	k141_138043_125	148728	149633	-	3.A.1.3.27
TC	k141_138043	k141_138043_126	149706	150542	-	3.A.1.3.9
TC	k141_138043	k141_138043_127	150535	151209	-	3.A.1.3.2
TC	k141_138043	k141_138043_128	151196	151852	-	3.A.1.3.12
pfam	k141_138043	k141_138043_129	152117	152731	+	Acetyltransf_1 \| Acetyltransf_7
sulfatase	k141_138043	k141_138043_130	153180	155195	-	S1_97
TC	k141_138043	k141_138043_131	155506	156702	-	2.A.45.2.6
pfam	k141_138043	k141_138043_132	157088	159169	-	Toprim \| Zn_ribbon_DnaG \| DNAG_N \| DnaB_bind \| Toprim_2 \| Toprim_4
pfam	k141_138043	k141_138043_133	159275	160849	-	Ala_racemase_C \| Ala_racemase_N
TC	k141_138043	k141_138043_134	160878	162305	+	2.A.3.3.22
NULL(UNKNOWN)	k141_138043	k141_138043_135	162510	163046	-	NULL(UNKNOWN) [View Structural Homologs]
pfam	k141_138043	k141_138043_136	163154	163639	-	LuxS
TC	k141_138043	k141_138043_137	163806	165752	-	2.A.16.2.2
TC	k141_138043	k141_138043_138	165761	168556	-	3.A.1.122.2
pfam	k141_138043	k141_138043_139	168791	169972	-	DegT_DnrJ_EryC1 \| Cys_Met_Meta_PP
STP	k141_138043	k141_138043_140	170052	171062	-	PALP
TC	k141_138043	k141_138043_141	171466	172236	-	3.A.1.5.41
TC	k141_138043	k141_138043_142	172236	173018	-	3.A.1.5.10
TC	k141_138043	k141_138043_143	173015	173959	-	3.A.1.5.3
TC	k141_138043	k141_138043_144	173956	174936	-	3.A.1.5.3
TC	k141_138043	k141_138043_145	174947	176602	-	3.A.1.5.39
pfam	k141_138043	k141_138043_146	176809	178092	+	Flavoprotein \| DFP
pfam	k141_138043	k141_138043_147	178161	178931	+	Pan_kinase
TC	k141_138043	k141_138043_148	179047	180474	-	3.A.1.1.48
TC	k141_138043	k141_138043_149	180674	182032	-	3.A.1.1.44
CAZyme	k141_138043	k141_138043_150	182310	183869	+	GH51_1
CAZyme	k141_138043	k141_138043_151	183968	186037	-	GH42

Gene ID: k141_138043_121
Type: TC
Location: 144678 - 145337 (-)

Gene ID: k141_138043_122
Type: TC
Location: 145343 - 146404 (-)

Gene ID: k141_138043_123
Type: TC
Location: 146540 - 147415 (-)

Gene ID: k141_138043_124
Type: pfam
Location: 147455 - 148477 (-)

Gene ID: k141_138043_125
Type: TC
Location: 148728 - 149633 (-)

Gene ID: k141_138043_126
Type: TC
Location: 149706 - 150542 (-)

Gene ID: k141_138043_127
Type: TC
Location: 150535 - 151209 (-)

Gene ID: k141_138043_128
Type: TC
Location: 151196 - 151852 (-)

Gene ID: k141_138043_129
Type: pfam
Location: 152117 - 152731 (+)

Gene ID: k141_138043_130
Type: sulfatase
Location: 153180 - 155195 (-)

Gene ID: k141_138043_131
Type: TC
Location: 155506 - 156702 (-)

Gene ID: k141_138043_132
Type: pfam
Location: 157088 - 159169 (-)

Gene ID: k141_138043_133
Type: pfam
Location: 159275 - 160849 (-)

Gene ID: k141_138043_134
Type: TC
Location: 160878 - 162305 (+)

Gene ID: k141_138043_135
Type:
Location: 162510 - 163046 (-)

Gene ID: k141_138043_136
Type: pfam
Location: 163154 - 163639 (-)

Gene ID: k141_138043_137
Type: TC
Location: 163806 - 165752 (-)

Gene ID: k141_138043_138
Type: TC
Location: 165761 - 168556 (-)

Gene ID: k141_138043_139
Type: pfam
Location: 168791 - 169972 (-)

Gene ID: k141_138043_140
Type: STP
Location: 170052 - 171062 (-)

Gene ID: k141_138043_141
Type: TC
Location: 171466 - 172236 (-)

Gene ID: k141_138043_142
Type: TC
Location: 172236 - 173018 (-)

Gene ID: k141_138043_143
Type: TC
Location: 173015 - 173959 (-)

Gene ID: k141_138043_144
Type: TC
Location: 173956 - 174936 (-)

Gene ID: k141_138043_145
Type: TC
Location: 174947 - 176602 (-)

Gene ID: k141_138043_146
Type: pfam
Location: 176809 - 178092 (+)

Gene ID: k141_138043_147
Type: pfam
Location: 178161 - 178931 (+)

Gene ID: k141_138043_148
Type: TC
Location: 179047 - 180474 (-)

Gene ID: k141_138043_149
Type: TC
Location: 180674 - 182032 (-)

Gene ID: k141_138043_150
Type: CAZyme
Location: 182310 - 183869 (+)

Gene ID: k141_138043_151
Type: CAZyme
Location: 183968 - 186037 (-)

Taxonomic Lineage

Domain

Bacteria

→

Phylum

Actinomycetota

→

Class

Actinomycetes

→

Order

Actinomycetales

→

Family

Bifidobacteriaceae

→

Genus

Bifidobacterium

→

Species

Bifidobacterium catenulatum

Gene Level Read Mapping

Diet (De Filippis et al., 2019)
Diet (Huang et al., 2024)
IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID	Condition Pair	log2FC	FDR P-value
k141_138043_121	vegan > omnivore	2.03772	0.00565
k141_138043_122	vegan > omnivore	2.03404	0.00565
k141_138043_123	vegan > omnivore	2.28584	0.00565
k141_138043_124	vegan > omnivore	2.14748	0.00565
k141_138043_135	vegan > omnivore	1.08946	0.00565
k141_138043_136	vegetarian > omnivore	1.30542	0.00754
k141_138043_136	vegan > omnivore	1.08925	0.00565
k141_138043_143	vegetarian > vegan	3.88656	0.00908
k141_138043_149	vegetarian > omnivore	16.16732	0.00754
k141_138043_149	vegan > omnivore	15.97349	0.00565
k141_138043_150	vegetarian > omnivore	2.21529	0.00754
k141_138043_150	vegan > omnivore	2.74289	0.00565

Gene ID	Condition Pair	log2FC	FDR P-value
k141_138043_121	vegan > omnivore	2.43869	0.01460
k141_138043_122	vegan > omnivore	1.97154	0.01460
k141_138043_123	vegan > omnivore	2.52712	0.01460
k141_138043_124	vegan > omnivore	2.25061	0.01460
k141_138043_138	vegan > omnivore	1.85020	0.01460

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