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Cluster: KY106_bin.38_sub_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_283184 k141_283184_1 559 2973 - GH95
TF k141_283184 k141_283184_2 3017 4195 - HTH_AraC | HTH_AraC
TC k141_283184 k141_283184_3 4225 5994 - 8.A.59.2.1
TC k141_283184 k141_283184_4 6273 7619 + 3.A.1.1.18
TC k141_283184 k141_283184_5 7731 8612 + 3.A.1.1.18
TC k141_283184 k141_283184_6 8623 9450 + 3.A.1.1.25
CAZyme k141_283184 k141_283184_7 9465 10898 + GH29
TC k141_283184 k141_283184_8 11035 11898 + 2.A.115.1.1
pfam k141_283184 k141_283184_9 12009 13379 + MatE | MatE
NULL(UNKNOWN) k141_283184 k141_283184_10 13426 13947 - NULL(UNKNOWN)
[View Structural Homologs]
TC k141_283184 k141_283184_11 14123 15499 + 2.A.22.5.3
Gene ID: k141_283184_1
Type: CAZyme
Location: 559 - 2973 (-)
Gene ID: k141_283184_2
Type: TF
Location: 3017 - 4195 (-)
Gene ID: k141_283184_3
Type: TC
Location: 4225 - 5994 (-)
Gene ID: k141_283184_4
Type: TC
Location: 6273 - 7619 (+)
Gene ID: k141_283184_5
Type: TC
Location: 7731 - 8612 (+)
Gene ID: k141_283184_6
Type: TC
Location: 8623 - 9450 (+)
Gene ID: k141_283184_7
Type: CAZyme
Location: 9465 - 10898 (+)
Gene ID: k141_283184_8
Type: TC
Location: 11035 - 11898 (+)
Gene ID: k141_283184_9
Type: pfam
Location: 12009 - 13379 (+)
Gene ID: k141_283184_10
Type:
Location: 13426 - 13947 (-)
Gene ID: k141_283184_11
Type: TC
Location: 14123 - 15499 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_283184_4 vegan > omnivore 1.17371 0.00701
k141_283184_9 vegetarian > vegan 2.17299 0.00455

🧭 Explore Read Mapping of CGC

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