Cluster: KY001_26_CGC2
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 3
- Substrate:
- Genome ID: KY001_26
- CGC Family ID: CGCFAM_00702
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_178003 | k141_178003_122 | 107019 | 107789 | - | 3.D.10.1.4 |
| TC | k141_178003 | k141_178003_123 | 107782 | 109581 | - | 3.D.10.1.4 |
| pfam | k141_178003 | k141_178003_124 | 109860 | 110843 | + | tRNA-synt_2 |
| TC | k141_178003 | k141_178003_125 | 111156 | 112199 | + | 1.B.1.3.1 |
| pfam | k141_178003 | k141_178003_126 | 112539 | 113510 | - | Ferrochelatase |
| pfam | k141_178003 | k141_178003_127 | 113507 | 113926 | - | 4HBT |
| TC | k141_178003 | k141_178003_128 | 114326 | 118249 | + | 1.B.40.2.2 |
| CAZyme | k141_178003 | k141_178003_129 | 118406 | 119242 | + | GT8 |
| CAZyme | k141_178003 | k141_178003_130 | 119266 | 120240 | - | GT2 |
| CAZyme | k141_178003 | k141_178003_131 | 120275 | 121402 | - | GT2 |
| STP | k141_178003 | k141_178003_132 | 121618 | 122988 | + | Pyr_redox_2 |
| peptidase | k141_178003 | k141_178003_133 | 123057 | 123884 | - | C44.UPW |
| TC | k141_178003 | k141_178003_134 | 124105 | 125421 | - | 2.A.1.15.11 |
| TC | k141_178003 | k141_178003_135 | 125436 | 126143 | - | 2.A.88.8.6 |
| TC | k141_178003 | k141_178003_136 | 126385 | 128640 | + | 1.B.14.1.3 |
Gene ID: k141_178003_122
Type: TC
Location: 107019 - 107789 (-)
Type: TC
Location: 107019 - 107789 (-)
Gene ID: k141_178003_123
Type: TC
Location: 107782 - 109581 (-)
Type: TC
Location: 107782 - 109581 (-)
Gene ID: k141_178003_124
Type: pfam
Location: 109860 - 110843 (+)
Type: pfam
Location: 109860 - 110843 (+)
Gene ID: k141_178003_125
Type: TC
Location: 111156 - 112199 (+)
Type: TC
Location: 111156 - 112199 (+)
Gene ID: k141_178003_126
Type: pfam
Location: 112539 - 113510 (-)
Type: pfam
Location: 112539 - 113510 (-)
Gene ID: k141_178003_127
Type: pfam
Location: 113507 - 113926 (-)
Type: pfam
Location: 113507 - 113926 (-)
Gene ID: k141_178003_128
Type: TC
Location: 114326 - 118249 (+)
Type: TC
Location: 114326 - 118249 (+)
Gene ID: k141_178003_129
Type: CAZyme
Location: 118406 - 119242 (+)
Type: CAZyme
Location: 118406 - 119242 (+)
Gene ID: k141_178003_130
Type: CAZyme
Location: 119266 - 120240 (-)
Type: CAZyme
Location: 119266 - 120240 (-)
Gene ID: k141_178003_131
Type: CAZyme
Location: 120275 - 121402 (-)
Type: CAZyme
Location: 120275 - 121402 (-)
Gene ID: k141_178003_132
Type: STP
Location: 121618 - 122988 (+)
Type: STP
Location: 121618 - 122988 (+)
Gene ID: k141_178003_133
Type: peptidase
Location: 123057 - 123884 (-)
Type: peptidase
Location: 123057 - 123884 (-)
Gene ID: k141_178003_134
Type: TC
Location: 124105 - 125421 (-)
Type: TC
Location: 124105 - 125421 (-)
Gene ID: k141_178003_135
Type: TC
Location: 125436 - 126143 (-)
Type: TC
Location: 125436 - 126143 (-)
Gene ID: k141_178003_136
Type: TC
Location: 126385 - 128640 (+)
Type: TC
Location: 126385 - 128640 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp927911595
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_178003_133 | vegan > omnivore | 1.60705 | 0.00918 |
| k141_178003_133 | vegetarian > omnivore | 1.06250 | 0.00878 |