Cluster: HRGMv2_4823_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4823
- CGC Family ID: CGCFAM_01881
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4823_29 | HRGMv2_4823_29_6 | 4077 | 5006 | + | GT2 |
| pfam | HRGMv2_4823_29 | HRGMv2_4823_29_7 | 4999 | 6015 | + | 3Beta_HSD | Epimerase | GDP_Man_Dehyd |
| pfam | HRGMv2_4823_29 | HRGMv2_4823_29_8 | 6019 | 6906 | + | Polysacc_deac_1 | DUF2334 |
| TC | HRGMv2_4823_29 | HRGMv2_4823_29_9 | 6912 | 7517 | + | 2.A.95.1.2 |
Gene ID: HRGMv2_4823_29_6
Type: CAZyme
Location: 4077 - 5006 (+)
Type: CAZyme
Location: 4077 - 5006 (+)
Gene ID: HRGMv2_4823_29_7
Type: pfam
Location: 4999 - 6015 (+)
Type: pfam
Location: 4999 - 6015 (+)
Gene ID: HRGMv2_4823_29_8
Type: pfam
Location: 6019 - 6906 (+)
Type: pfam
Location: 6019 - 6906 (+)
Gene ID: HRGMv2_4823_29_9
Type: TC
Location: 6912 - 7517 (+)
Type: TC
Location: 6912 - 7517 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
UBA9339
Family
UBA9339
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.