Cluster: HRGMv2_4823_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4823
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4823_6 | HRGMv2_4823_6_1 | 3 | 1472 | - | 1.B.22.2.1 |
| NULL(UNKNOWN) | HRGMv2_4823_6 | HRGMv2_4823_6_2 | 1469 | 2761 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4823_6 | HRGMv2_4823_6_3 | 2838 | 5159 | + | GT51 |
| NULL(UNKNOWN) | HRGMv2_4823_6 | HRGMv2_4823_6_4 | 5440 | 5835 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4823_6 | HRGMv2_4823_6_5 | 6114 | 7358 | - | 2.A.23.2.11 |
| TF | HRGMv2_4823_6 | HRGMv2_4823_6_6 | 7676 | 8083 | + | GerE |
| TC | HRGMv2_4823_6 | HRGMv2_4823_6_7 | 8212 | 10134 | - | 8.A.59.2.2 |
Gene ID: HRGMv2_4823_6_1
Type: TC
Location: 3 - 1472 (-)
Type: TC
Location: 3 - 1472 (-)
Gene ID: HRGMv2_4823_6_2
Type:
Location: 1469 - 2761 (-)
Type:
Location: 1469 - 2761 (-)
Gene ID: HRGMv2_4823_6_3
Type: CAZyme
Location: 2838 - 5159 (+)
Type: CAZyme
Location: 2838 - 5159 (+)
Gene ID: HRGMv2_4823_6_4
Type:
Location: 5440 - 5835 (-)
Type:
Location: 5440 - 5835 (-)
Gene ID: HRGMv2_4823_6_5
Type: TC
Location: 6114 - 7358 (-)
Type: TC
Location: 6114 - 7358 (-)
Gene ID: HRGMv2_4823_6_6
Type: TF
Location: 7676 - 8083 (+)
Type: TF
Location: 7676 - 8083 (+)
Gene ID: HRGMv2_4823_6_7
Type: TC
Location: 8212 - 10134 (-)
Type: TC
Location: 8212 - 10134 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
UBA9339
Family
UBA9339
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.